Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IRB21_RS06740 Genome accession   NZ_CP064089
Coordinates   1348398..1348976 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain N435-3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343398..1353976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS06720 - 1343891..1345186 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  IRB21_RS06725 - 1345278..1346810 (-) 1533 WP_242731842.1 FAD-dependent oxidoreductase -
  IRB21_RS06730 - 1346953..1347813 (+) 861 WP_017366957.1 SDR family oxidoreductase -
  IRB21_RS06735 - 1347872..1348108 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  IRB21_RS06740 comK 1348398..1348976 (+) 579 WP_017366958.1 competence protein ComK Regulator
  IRB21_RS06745 - 1349120..1350226 (+) 1107 WP_242731844.1 D-TA family PLP-dependent enzyme -
  IRB21_RS06750 - 1350528..1351010 (+) 483 WP_242731845.1 hypothetical protein -
  IRB21_RS06755 - 1351041..1352480 (-) 1440 WP_017360233.1 PLP-dependent aminotransferase family protein -
  IRB21_RS06760 - 1352624..1353793 (+) 1170 WP_081114756.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=498945 IRB21_RS06740 WP_017366958.1 1348398..1348976(+) (comK) [Bacillus altitudinis strain N435-3]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=498945 IRB21_RS06740 WP_017366958.1 1348398..1348976(+) (comK) [Bacillus altitudinis strain N435-3]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCTCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615