Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ISX45_RS14265 Genome accession   NZ_CP064060
Coordinates   2822984..2824483 (-) Length   499 a.a.
NCBI ID   WP_194519280.1    Uniprot ID   -
Organism   Thermaerobacillus caldiproteolyticus strain U458     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2817984..2829483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX45_RS14230 (ISX45_14230) - 2818333..2818827 (-) 495 WP_194519273.1 flagellar protein FlgN -
  ISX45_RS14235 (ISX45_14235) flgM 2818882..2819145 (-) 264 WP_194519274.1 flagellar biosynthesis anti-sigma factor FlgM -
  ISX45_RS14240 (ISX45_14240) - 2819226..2819639 (-) 414 WP_194519275.1 TIGR03826 family flagellar region protein -
  ISX45_RS14245 (ISX45_14245) - 2819696..2820133 (-) 438 WP_194519276.1 YaaR family protein -
  ISX45_RS14250 (ISX45_14250) - 2820145..2820402 (-) 258 WP_194519277.1 flagellar biosynthesis protein FlhB -
  ISX45_RS14255 (ISX45_14255) - 2820399..2822195 (-) 1797 WP_194519278.1 hypothetical protein -
  ISX45_RS14260 (ISX45_14260) - 2822277..2822987 (-) 711 WP_194519279.1 ComF family protein -
  ISX45_RS14265 (ISX45_14265) comFA 2822984..2824483 (-) 1500 WP_194519280.1 DEAD/DEAH box helicase Machinery gene
  ISX45_RS14270 (ISX45_14270) - 2824572..2825414 (-) 843 WP_194520711.1 DegV family protein -
  ISX45_RS14275 (ISX45_14275) - 2825521..2826198 (-) 678 WP_181555496.1 response regulator -
  ISX45_RS14280 (ISX45_14280) - 2826233..2827378 (-) 1146 WP_181555495.1 sensor histidine kinase -
  ISX45_RS14285 (ISX45_14285) - 2827678..2828313 (+) 636 WP_181555494.1 YigZ family protein -
  ISX45_RS14290 (ISX45_14290) - 2828348..2829382 (+) 1035 WP_181555493.1 LCP family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56359.41 Da        Isoelectric Point: 8.5263

>NTDB_id=498900 ISX45_RS14265 WP_194519280.1 2822984..2824483(-) (comFA) [Thermaerobacillus caldiproteolyticus strain U458]
MRFIEVEGKLIPESLAKEYGGEAKPISRIDHIVPLPLNPQFSVSTKLLSFLEGRHLLLDELPFPLDVIQTHYEHGYISYE
KGIVQTEQGWRCRRCGNENTHLFASFFCARCETICTYCRRCIMMGRVSECTPLLVSHFYSEPAMYEKPLAWNGELSLGQQ
QAAEAVVAAVEKNLELLIWAVCGAGKTEVLFSGISRALELGKRVCIATPRTDVVLELAPRLKQAFPAVPVIALYGGSDER
GTLSPLAVATTHQLLRFYQAFDVMVIDEVDAFPYSVEPMLQYAVEKARKETSALIYVTATPHKAWQQEIKLGKRQAVTIP
ARYHGFPLPVPSFEWCGNWRKAVKRGLFPRNVSAWIERRLQEGKQAFLFVPHVELLERVVAILKQLDNRIEGVHAEDRER
KEKVHAFRKGNIPILVTTTILERGVTVPNIDVAVLGAEDDIFTEGALVQIAGRVGRSAQYPSGDIRFFHYGKTKEMLKAK
RQIIRMNKEAEERGMLKRG

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=498900 ISX45_RS14265 WP_194519280.1 2822984..2824483(-) (comFA) [Thermaerobacillus caldiproteolyticus strain U458]
ATGCGTTTTATCGAAGTAGAAGGAAAGCTCATTCCTGAATCGTTGGCGAAAGAATATGGTGGAGAGGCTAAGCCGATTAG
CCGCATTGATCACATTGTCCCCCTTCCCCTAAATCCTCAATTTTCTGTCTCAACAAAGCTTCTTTCCTTCCTTGAAGGAA
GGCACCTGCTTCTTGATGAACTTCCGTTTCCTCTCGATGTGATTCAAACGCATTATGAACATGGATATATATCGTATGAA
AAAGGGATCGTTCAAACGGAACAAGGCTGGCGTTGCAGGCGATGCGGCAATGAAAACACGCATTTATTTGCTTCATTTTT
CTGTGCGCGCTGTGAAACGATCTGTACGTACTGCCGTCGATGTATCATGATGGGACGTGTGAGCGAATGCACTCCGCTTC
TCGTCTCTCATTTTTACTCTGAGCCCGCTATGTATGAGAAGCCGCTAGCGTGGAATGGAGAGCTTTCTCTAGGACAACAG
CAAGCAGCCGAAGCGGTTGTTGCTGCTGTAGAGAAAAACCTGGAACTGCTCATTTGGGCAGTATGCGGTGCTGGAAAGAC
GGAGGTGTTATTTTCCGGTATCAGTCGGGCGCTCGAACTTGGAAAGCGCGTATGTATCGCAACGCCTCGCACCGATGTTG
TATTAGAGCTCGCCCCTCGTCTAAAACAAGCTTTTCCAGCTGTTCCCGTCATCGCGTTATATGGCGGAAGCGACGAGCGC
GGTACGTTATCTCCGCTTGCCGTTGCGACGACGCACCAATTGTTGCGATTTTACCAGGCGTTTGATGTGATGGTCATTGA
TGAAGTCGATGCCTTTCCGTATTCTGTTGAGCCGATGTTGCAGTATGCCGTAGAGAAAGCGAGAAAAGAAACATCTGCTC
TCATCTATGTCACAGCAACTCCTCATAAAGCGTGGCAGCAAGAAATTAAGCTCGGAAAGCGACAAGCTGTCACGATTCCC
GCACGTTATCACGGATTTCCTCTTCCTGTTCCTTCGTTTGAATGGTGCGGCAATTGGCGAAAAGCAGTAAAACGTGGGCT
GTTTCCCCGCAATGTGTCCGCGTGGATCGAACGAAGACTCCAAGAAGGAAAGCAAGCGTTTTTATTCGTTCCCCATGTTG
AGCTGTTAGAACGTGTGGTTGCCATTTTAAAACAACTTGATAATCGGATTGAAGGCGTTCATGCAGAAGACCGAGAGCGG
AAAGAAAAAGTCCACGCGTTTCGGAAAGGAAACATTCCAATTCTTGTGACAACGACGATTTTAGAGAGAGGGGTAACGGT
TCCCAATATTGATGTCGCTGTGCTTGGAGCCGAAGACGATATTTTTACGGAAGGGGCGCTCGTCCAAATTGCCGGGCGGG
TTGGGCGCAGCGCACAATATCCAAGCGGAGATATTCGTTTTTTTCACTACGGAAAAACAAAGGAGATGTTGAAAGCAAAG
CGGCAAATTATACGCATGAACAAAGAAGCTGAGGAAAGGGGGATGTTGAAGCGGGGATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(360-457)

Type III restriction enzyme, res subunit (ResIII)

(155-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

91.383

0.481