Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ISX45_RS10015 Genome accession   NZ_CP064060
Coordinates   2011957..2013678 (-) Length   573 a.a.
NCBI ID   WP_181554346.1    Uniprot ID   A0A7V9Z3N9
Organism   Thermaerobacillus caldiproteolyticus strain U458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006957..2018678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX45_RS09995 (ISX45_09995) - 2007378..2008280 (-) 903 WP_194518888.1 class I SAM-dependent methyltransferase -
  ISX45_RS19630 - 2008570..2008866 (-) 297 WP_267240180.1 site-specific integrase -
  ISX45_RS10005 (ISX45_10005) spo0A 2009437..2010219 (-) 783 WP_181554344.1 sporulation transcription factor Spo0A -
  ISX45_RS10010 (ISX45_10010) spoIVB 2010544..2011833 (-) 1290 WP_181554345.1 SpoIVB peptidase -
  ISX45_RS10015 (ISX45_10015) recN 2011957..2013678 (-) 1722 WP_181554346.1 DNA repair protein RecN Machinery gene
  ISX45_RS10020 (ISX45_10020) ahrC 2013698..2014147 (-) 450 WP_181554347.1 transcriptional regulator AhrC/ArgR -
  ISX45_RS10025 (ISX45_10025) - 2014201..2015046 (-) 846 WP_194518889.1 TlyA family RNA methyltransferase -
  ISX45_RS10030 (ISX45_10030) dxs 2015050..2016942 (-) 1893 WP_194518890.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ISX45_RS10035 (ISX45_10035) - 2017156..2018049 (-) 894 WP_181554350.1 polyprenyl synthetase family protein -
  ISX45_RS10040 (ISX45_10040) - 2018054..2018287 (-) 234 WP_181554351.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64772.87 Da        Isoelectric Point: 4.7847

>NTDB_id=498887 ISX45_RS10015 WP_181554346.1 2011957..2013678(-) (recN) [Thermaerobacillus caldiproteolyticus strain U458]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEERAEIEGLFLLDDETHPCYEK
CAEVGIDISEGMVVLRREISANGKSVCRVNGKLVTMAVLRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEYGGTEIATAL
EEYRAVYEKYEQLTKQLKKLNENEQQMAHRLDLLTFQLDEIQKANLQPNEDEQLMEEKVKIMNFQKIYEALKHSYEALYG
EQRGLDWIGLAMSHLDDVSHIDQALKEAHETIANSYYLLEEIAYKLRDELEQLEYDPERLDFIESRLNEINHLKRKYGQT
VADILQYAETITEEIDTIQNRETHIHQLQKELQSVTEDLLVEAKNVTSIRMKYAKTLIDHIHQELKDLYMDKTQFDIVFE
KREGALDAPLLDGVPVKFHEDGVDLVEFYISTNVGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSVGSQVLCISHLPQVAAMADTHLFISKETVGNRTKTSVKALTEEEKIKEIGRMISGVEITELTKEH
AKELLELATKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=498887 ISX45_RS10015 WP_181554346.1 2011957..2013678(-) (recN) [Thermaerobacillus caldiproteolyticus strain U458]
GTGCTAGCGGAATTATCGATTAAAAATTTTGCGATTATCGAATCGTTATCGATTTCGTTTGAAAAAGGATTAACGGTGTT
AACAGGAGAGACAGGAGCCGGAAAATCGATTATTATTGATGCCATTCATTTGCTTATTGGCGGCCGTGGCTCAGCGGAGT
TTGTCCGCTATGGGGAAGAGCGTGCAGAAATTGAGGGCTTATTCTTGCTCGACGACGAAACACATCCATGTTATGAGAAA
TGCGCGGAAGTCGGCATTGACATTAGCGAAGGGATGGTCGTATTGCGCCGGGAAATTTCCGCTAATGGAAAGAGCGTCTG
CCGTGTCAACGGCAAATTAGTGACGATGGCTGTTTTACGCGATATTGGTTCGACGCTTGTCGATATTCACGGCCAACATG
AACACCAAGAGCTGATGGATCCAAGCCGACATCTCCCGTTGCTTGATGAGTATGGCGGAACAGAAATCGCTACCGCTCTT
GAAGAATATCGTGCTGTATATGAAAAATATGAACAGCTGACCAAACAGCTGAAAAAATTAAATGAAAATGAGCAACAAAT
GGCACACCGTCTCGATTTGTTAACATTCCAGCTTGATGAAATTCAAAAGGCGAACTTACAGCCGAATGAAGACGAGCAAT
TGATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAAATTTACGAGGCGTTAAAACATAGCTACGAGGCCTTGTATGGC
GAACAGCGTGGGCTTGATTGGATCGGGCTCGCGATGAGCCATTTAGATGATGTAAGCCATATCGACCAAGCGTTAAAGGA
AGCACATGAAACGATTGCCAATAGCTATTATTTGCTTGAGGAAATCGCTTATAAATTACGCGATGAGCTGGAACAATTAG
AATATGACCCGGAGCGCCTTGATTTCATTGAGAGCCGCCTTAATGAAATTAACCATTTGAAGCGAAAATACGGACAAACG
GTGGCGGATATTTTACAGTATGCTGAAACCATTACAGAAGAAATTGACACGATCCAAAATCGGGAAACACATATCCATCA
GCTTCAAAAAGAGCTCCAATCCGTAACGGAAGATTTGCTGGTGGAAGCGAAAAATGTCACGAGTATTCGCATGAAATACG
CAAAAACACTTATTGATCACATTCATCAAGAGCTTAAAGATTTATATATGGACAAAACTCAATTTGACATTGTTTTTGAG
AAGCGGGAAGGGGCATTAGACGCACCATTGCTTGATGGAGTTCCAGTAAAGTTTCACGAAGATGGTGTTGATCTTGTTGA
ATTTTACATTTCGACTAACGTCGGAGAACCGTTAAAACCGCTGGCAAAAGTCGCTTCTGGCGGAGAATTGTCGCGAATTA
TGTTAGCGTTAAAAAGTATTTTTTCCAAACATCAAGGGGTCACGTCGATCATTTTCGATGAAGTTGATACCGGTGTCAGT
GGTCGCGTAGCACAGGCGATTGCCGAAAAAATTTATCGCGTCTCTGTCGGTTCCCAAGTTCTTTGTATTTCACATTTACC
ACAAGTAGCGGCGATGGCTGATACGCACTTATTTATTTCCAAAGAAACGGTAGGAAATCGCACAAAAACATCTGTTAAAG
CATTAACCGAAGAAGAAAAAATTAAAGAAATTGGCCGGATGATTTCCGGGGTCGAAATTACGGAATTAACAAAAGAGCAC
GCCAAAGAATTGCTTGAGCTAGCAACAAAAATTAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V9Z3N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.937

100

0.64