Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   KHS93_RS19285 Genome accession   NZ_CP075547
Coordinates   3903526..3904320 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3898526..3909320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS19265 (KHS93_19265) - 3898908..3899915 (-) 1008 WP_014306163.1 ThiF family adenylyltransferase -
  KHS93_RS19270 (KHS93_19270) - 3900147..3901565 (-) 1419 WP_004393117.1 HAMP domain-containing sensor histidine kinase -
  KHS93_RS19275 (KHS93_19275) - 3901562..3901774 (-) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  KHS93_RS19280 (KHS93_19280) htrA 3902243..3903439 (-) 1197 WP_069473656.1 S1C family serine protease Regulator
  KHS93_RS19285 (KHS93_19285) vicX 3903526..3904320 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  KHS93_RS19290 (KHS93_19290) yycI 3904335..3905174 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  KHS93_RS19295 (KHS93_19295) yycH 3905161..3906519 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  KHS93_RS19300 (KHS93_19300) walK 3906509..3908344 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  KHS93_RS19305 (KHS93_19305) walR 3908351..3909058 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=498884 KHS93_RS19285 WP_004393110.1 3903526..3904320(-) (vicX) [Bacillus amyloliquefaciens strain SN16-1]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=498884 KHS93_RS19285 WP_004393110.1 3903526..3904320(-) (vicX) [Bacillus amyloliquefaciens strain SN16-1]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAATGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527