Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   KHS93_RS15985 Genome accession   NZ_CP075547
Coordinates   3248036..3250351 (-) Length   771 a.a.
NCBI ID   WP_069473578.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3243036..3255351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS15975 (KHS93_15975) cysI 3244310..3246025 (-) 1716 WP_069473576.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  KHS93_RS15980 (KHS93_15980) - 3246053..3247861 (-) 1809 WP_069473577.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  KHS93_RS15985 (KHS93_15985) helD 3248036..3250351 (-) 2316 WP_069473578.1 RNA polymerase recycling motor HelD Machinery gene
  KHS93_RS15990 (KHS93_15990) - 3250524..3251132 (-) 609 WP_003151732.1 trimeric intracellular cation channel family protein -
  KHS93_RS15995 (KHS93_15995) - 3251355..3252155 (+) 801 WP_003151731.1 zinc-dependent metalloprotease -
  KHS93_RS16000 (KHS93_16000) - 3252189..3252608 (-) 420 WP_007410015.1 disulfide oxidoreductase -
  KHS93_RS16005 (KHS93_16005) - 3252598..3253269 (-) 672 WP_161503348.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87924.83 Da        Isoelectric Point: 6.0335

>NTDB_id=498866 KHS93_RS15985 WP_069473578.1 3248036..3250351(-) (helD) [Bacillus amyloliquefaciens strain SN16-1]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLAAIAYKASSAFQALIDRYAGSLSVSGLICKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISVLEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTGNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGSSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTENARREQLADTIRELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYNSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=498866 KHS93_RS15985 WP_069473578.1 3248036..3250351(-) (helD) [Bacillus amyloliquefaciens strain SN16-1]
ATGGCAAAACGTGATAAAGAATGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAATTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATACTCCCCGGGAAAAGCCCGCTATGAAGTTCCGGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTCATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAACATCGTGTCGACCATCC
AAAAAGAACAGAACGAGATCATCCGGGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTTAACAGTTATGTTTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGTCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATCAGGACGCACTTTCCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCGTCAGCTTTCCAGGCCCTGATTGACCG
CTATGCCGGGTCGCTTTCGGTCTCCGGCCTGATATGTAAACAGATCAGCTTTCGGGGAGACATCCTGATTTCAAAAGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGTTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GCCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CGGAAACGCATTTGCAGAACGGTCGCTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AGAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATTCAA
AGCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCATACCATTACGGGCTCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAATGCGCGGCGGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCTGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGGCGGTCAGCGCCGAGAGCGGTGTCCGTTTAATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGATGCCTCTGCTGCCCAGTACAATAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATTTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(601-685)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.883

99.87

0.668