Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ISP08_RS11230 Genome accession   NZ_CP064056
Coordinates   2275018..2276385 (-) Length   455 a.a.
NCBI ID   WP_048792350.1    Uniprot ID   A0A7T1AZC2
Organism   Staphylococcus lloydii strain 23_2_7_LY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2270018..2281385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISP08_RS11215 (ISP08_11210) cysE 2271110..2271739 (-) 630 WP_048792742.1 serine O-acetyltransferase -
  ISP08_RS11220 (ISP08_11215) gltX 2272075..2273529 (-) 1455 WP_048792352.1 glutamate--tRNA ligase -
  ISP08_RS11225 (ISP08_11220) - 2273879..2274943 (-) 1065 WP_048792351.1 PIN/TRAM domain-containing protein -
  ISP08_RS11230 (ISP08_11225) radA 2275018..2276385 (-) 1368 WP_048792350.1 DNA repair protein RadA Machinery gene
  ISP08_RS11235 (ISP08_11230) - 2276654..2279116 (-) 2463 WP_048792349.1 ATP-dependent Clp protease ATP-binding subunit -
  ISP08_RS11240 (ISP08_11235) - 2279129..2280139 (-) 1011 WP_048792348.1 protein arginine kinase -
  ISP08_RS11245 (ISP08_11240) - 2280120..2280686 (-) 567 WP_048792347.1 UvrB/UvrC motif-containing protein -
  ISP08_RS11250 (ISP08_11245) - 2280702..2281163 (-) 462 WP_195718679.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50191.63 Da        Isoelectric Point: 7.4840

>NTDB_id=498856 ISP08_RS11230 WP_048792350.1 2275018..2276385(-) (radA) [Staphylococcus lloydii strain 23_2_7_LY]
MAKKKVIYECMACGYQSPKWMGKCPNCGAWNQMEESIAQKESSPKHGVRSKSTSSKVQKLNEVRHETTPRIKSKSDEFNR
VLGGGVVSGSLVLIGGDPGIGKSTLLLQICAALSQDYNILYITGEESLNQTKLRAERLEEDSSQLNVFAETDLEIIHETV
KQIQPDMIVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDKAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKKVIIPETNIGGWTFPDNIKVVGVKSVHEALKHALKN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=498856 ISP08_RS11230 WP_048792350.1 2275018..2276385(-) (radA) [Staphylococcus lloydii strain 23_2_7_LY]
TTGGCCAAAAAGAAAGTAATTTATGAATGTATGGCATGTGGCTATCAATCTCCGAAATGGATGGGAAAATGCCCGAACTG
CGGTGCATGGAATCAAATGGAAGAGAGTATAGCGCAGAAAGAAAGTAGTCCGAAACATGGTGTGAGAAGCAAGTCTACAT
CATCTAAAGTGCAAAAGTTAAATGAAGTTCGTCATGAAACGACGCCTAGAATTAAAAGTAAATCTGACGAGTTTAATAGA
GTCCTTGGTGGCGGTGTAGTAAGTGGTTCATTAGTACTGATTGGTGGAGACCCAGGTATTGGGAAATCTACATTATTATT
ACAAATCTGTGCTGCCTTATCTCAAGACTATAATATTTTATACATAACAGGTGAAGAATCTTTAAATCAAACTAAGTTAA
GGGCCGAAAGATTAGAAGAGGATTCTAGTCAGTTAAATGTATTTGCAGAAACGGATTTAGAAATCATTCATGAAACAGTA
AAACAAATACAACCCGATATGATTGTTGTGGACTCGATTCAAACAATATTCCACCCGGAAATCAGTTCTGCACCTGGTTC
AGTGTCACAAGTTAGAGAGAGTACCCAAAGTCTTATGAATATTGCTAAACAAATGAATATTGCTACATTTATCGTTGGTC
ATGTAACGAAAGAAGGTCAAATTGCAGGCCCACGTTTACTTGAACATATGGTTGATACTGTATTGTATTTTGAAGGTGAT
GAACACCACGCTTATCGAATTTTAAGAGCGGTCAAAAACCGTTTTGGTTCTACTAATGAGATGGGTATTTTCGAGATGAA
ACAGAGTGGTTTAAAAGGTGTCCAAAATCCTTCTGAAATGTTTTTAGAAGAACGTTCGACAAATGTGCCAGGTTCTACGA
TTGTATCAACTATGGAAGGTACTAGACCATTGTTGATTGAGGTACAAGCTTTAGTCACGCCAACTACTTTTAACAACCCT
AGACGAATGGCTACAGGTATCGATCACAATCGTTTAAGCTTATTGATGGCTGTATTAGAGAAAAAAGAAAATTATTTGCT
ACAACAACAAGACGCATATATTAAAGTTGCAGGTGGGGTTAGATTAACGGAGCCTGCAGTTGACTTAGGTATTATAATAG
CTACAGCGTCAAGTTTTAAAGATAAGGCTGTTGATGGCTTGGATTGTTTTATAGGCGAAGTTGGACTTACTGGTGAAGTA
CGACGCGTTTCTAGAATAGAACAACGCGTACAAGAAGCAGCTAAACTAGGATTTAAAAAAGTTATTATACCCGAAACAAA
TATAGGTGGCTGGACATTCCCAGACAACATAAAAGTTGTAGGCGTAAAAAGTGTCCACGAGGCTTTAAAACATGCTTTAA
AAAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1AZC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.474

100

0.646
  radA Streptococcus pneumoniae Rx1

59.603

99.56

0.593
  radA Streptococcus pneumoniae D39

59.603

99.56

0.593
  radA Streptococcus pneumoniae R6

59.603

99.56

0.593
  radA Streptococcus pneumoniae TIGR4

59.603

99.56

0.593
  radA Streptococcus mitis NCTC 12261

59.603

99.56

0.593
  radA Streptococcus mitis SK321

59.603

99.56

0.593