Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ISP08_RS04425 Genome accession   NZ_CP064056
Coordinates   934431..935156 (-) Length   241 a.a.
NCBI ID   WP_048793298.1    Uniprot ID   -
Organism   Staphylococcus lloydii strain 23_2_7_LY     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 929431..940156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISP08_RS04405 (ISP08_04405) - 930227..931321 (+) 1095 WP_195719500.1 YeeE/YedE family protein -
  ISP08_RS04410 (ISP08_04410) - 931340..931564 (+) 225 WP_048793301.1 sulfurtransferase TusA family protein -
  ISP08_RS04415 (ISP08_04415) - 931926..933404 (+) 1479 WP_195719499.1 sucrose-6-phosphate hydrolase -
  ISP08_RS04420 (ISP08_04420) - 933407..934375 (+) 969 WP_195719498.1 carbohydrate kinase -
  ISP08_RS04425 (ISP08_04425) agrA 934431..935156 (-) 726 WP_048793298.1 LytTR family DNA-binding domain-containing protein Regulator
  ISP08_RS12990 - 935175..935969 (-) 795 WP_341829569.1 GHKL domain-containing protein -
  ISP08_RS04435 (ISP08_04435) - 936493..936630 (-) 138 WP_048793296.1 cyclic lactone autoinducer peptide -
  ISP08_RS04440 (ISP08_04440) - 936632..937201 (-) 570 WP_048793295.1 accessory gene regulator AgrB -
  ISP08_RS04445 (ISP08_04445) - 937945..938730 (-) 786 WP_195719496.1 carbon-nitrogen family hydrolase -
  ISP08_RS04450 (ISP08_04450) - 938860..939489 (-) 630 WP_195719495.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 28174.06 Da        Isoelectric Point: 4.9512

>NTDB_id=498834 ISP08_RS04425 WP_048793298.1 934431..935156(-) (agrA) [Staphylococcus lloydii strain 23_2_7_LY]
MKIFICEDDTRQRDNMTSIINNYIMIEEKPMEIVKATGDPYEILEEARKLDDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKIAAMDFIFKDDPDELKTRIIDCIETAETRLKLLSKDSNVDTIELKQGSNSVYVRYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSYVINKNNVSAVNTKDRIIYFDNQEFCFASVRNIKKIKN
T

Nucleotide


Download         Length: 726 bp        

>NTDB_id=498834 ISP08_RS04425 WP_048793298.1 934431..935156(-) (agrA) [Staphylococcus lloydii strain 23_2_7_LY]
ATGAAAATTTTCATATGTGAGGATGATACAAGACAACGTGATAATATGACTTCAATTATAAACAACTACATTATGATTGA
AGAAAAGCCTATGGAAATTGTTAAAGCAACAGGAGATCCTTATGAAATACTAGAAGAAGCCCGCAAGTTGGATGATATCG
GTTGTTATTTTTTAGATATTCAACTAGAAGCGGACATAAATGGCATTAAATTAGCAAGTGAAATCCGGAAGCACGACCCT
GTTGGCAATATAATATTTGTCACAAGTCATAGTGAATTAACTTATTTAACCTTTGTTTATAAAATTGCCGCTATGGATTT
TATATTTAAAGATGACCCGGATGAATTAAAAACACGCATTATTGATTGTATTGAAACGGCAGAAACACGCTTAAAATTGT
TATCTAAAGATAGCAATGTCGACACTATTGAACTAAAACAAGGCAGTAACTCCGTATATGTACGCTATGATGATGTAATG
TTTTTTGAATCATCTTCCAAATCACATCGGTTAATAGCTCATTTAGACAATAGACAAATTGAATTTTATGGCAATTTAAA
AGAACTCAGTCAACTCGATGACCGCTTCTTCAGGTGCCATAATAGTTACGTCATAAACAAAAATAATGTCTCTGCTGTTA
ACACTAAAGATCGTATTATTTATTTCGATAACCAAGAATTTTGTTTCGCTTCAGTGCGTAACATTAAAAAGATTAAAAAC
ACTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

79.412

98.755

0.784