Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   ISP08_RS00235 Genome accession   NZ_CP064056
Coordinates   45391..46740 (-) Length   449 a.a.
NCBI ID   WP_196931175.1    Uniprot ID   A0A7T1AZX6
Organism   Staphylococcus lloydii strain 23_2_7_LY     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 44217..46740 45391..46740 within 0


Gene organization within MGE regions


Location: 44217..46740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISP08_RS00235 (ISP08_00235) ccrA 45391..46740 (-) 1350 WP_196931175.1 recombinase family protein Machinery gene

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52542.36 Da        Isoelectric Point: 9.9526

>NTDB_id=498831 ISP08_RS00235 WP_196931175.1 45391..46740(-) (ccrA) [Staphylococcus lloydii strain 23_2_7_LY]
MKQAIGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAQTIKAVFNYYLQGYGYKKIAQYLEEDNKLINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVERKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCKFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQERFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMKLSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=498831 ISP08_RS00235 WP_196931175.1 45391..46740(-) (ccrA) [Staphylococcus lloydii strain 23_2_7_LY]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTAATTCAACAGGGACAATGTGACGTATTATGTTGTTATAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCTAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACAATAGACACAGTAAAAGCACAAACAATAAAAGCTGTGTTCAATTATTACCTTCAAGGCTATGGTTA
TAAAAAAATTGCACAATATTTGGAAGAAGATAATAAGTTAATCAACCGAAAACCATATCAAGTACGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGCGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAGAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTAAATTTAAAGGAATCAACGCACAGGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAAGAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGCCT
CGCTGGCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATTATCAATTGTATAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1AZX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

94.655

100

0.947
  ccrA Staphylococcus aureus N315

74.165

100

0.742