Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   KHS93_RS05030 Genome accession   NZ_CP075547
Coordinates   982521..985403 (+) Length   960 a.a.
NCBI ID   WP_161503317.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 977521..990403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS05005 (KHS93_05005) - 977959..978726 (+) 768 WP_007409232.1 enoyl-CoA hydratase -
  KHS93_RS05010 (KHS93_05010) - 978751..978936 (-) 186 WP_003155259.1 YhzD family protein -
  KHS93_RS05015 (KHS93_05015) - 979042..979938 (+) 897 WP_003155257.1 ABC transporter ATP-binding protein -
  KHS93_RS05020 (KHS93_05020) - 979931..981190 (+) 1260 WP_003155256.1 ABC transporter permease -
  KHS93_RS05025 (KHS93_05025) - 981301..982524 (+) 1224 WP_003155255.1 DNA repair exonuclease -
  KHS93_RS05030 (KHS93_05030) sbcE 982521..985403 (+) 2883 WP_161503317.1 AAA family ATPase Machinery gene
  KHS93_RS05035 (KHS93_05035) yhaM 985477..986421 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  KHS93_RS05040 (KHS93_05040) - 986536..986763 (+) 228 WP_014304727.1 sporulation YhaL family protein -
  KHS93_RS05045 (KHS93_05045) - 986803..987654 (-) 852 WP_003155249.1 peptidylprolyl isomerase -
  KHS93_RS05050 (KHS93_05050) yhzE1 987813..987899 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  KHS93_RS05055 (KHS93_05055) yhzE2 988024..988110 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  KHS93_RS05060 (KHS93_05060) - 988167..988385 (-) 219 WP_003155245.1 hypothetical protein -
  KHS93_RS05065 (KHS93_05065) - 988446..988976 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  KHS93_RS05070 (KHS93_05070) - 989188..989529 (+) 342 WP_003155243.1 YhaI family protein -
  KHS93_RS05075 (KHS93_05075) - 989526..990137 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109596.68 Da        Isoelectric Point: 7.7843

>NTDB_id=498774 KHS93_RS05030 WP_161503317.1 982521..985403(+) (sbcE) [Bacillus amyloliquefaciens strain SN16-1]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDIAEEIKTVKSAIEA
KPLADKKTALESELSSYPDALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQAELLAPNEDLLQTERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVLSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGAGHKKKKPTISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLRVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREKTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYRKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAASLPFLLDDSFVHFDRQRLERLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=498774 KHS93_RS05030 WP_161503317.1 982521..985403(+) (sbcE) [Bacillus amyloliquefaciens strain SN16-1]
ATGAAAATAACGGCAATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACAACATTGATGTCCTTCATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGTGCCGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTTTCCGATACAGATCGGGCGCTGTACGAGGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAGCTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGATGCATTGAAGCAATTCCCGAAGGA
CGGGATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCTGCCCGTCTTGAGGGACTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGAGCTGCTCGCTCCAAATGAGGACTTGCTGCAAACAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTTGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTACAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCAATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAGCCGCTGCCGTCAGAAAGAGGAGG
GGCCGGTCACAAGAAAAAGAAGCCGACGATCTCCAAAGAAGCGGCTGACCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGTTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAATAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGTTGCAAAGAGCATTTGAGGACCGTGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCGCGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTCCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAATCGCGAACACTTTTGTGAACTCGCCAGACTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTTGAGCCGTATATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCGCAGCTCCGTGAGAAAACCG
CTTTATTAACGGTGAAACAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATCATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGCTACCGCAAAT
TGTATTTCTCCGAGGCGGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCAGCAGGCGAACTCTCACAG
GCGGCTTGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGCATCACTTCCATTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGGAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

56.95

100

0.572