Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   KHS93_RS03935 Genome accession   NZ_CP075547
Coordinates   776473..777189 (+) Length   238 a.a.
NCBI ID   WP_003155591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 771473..782189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS03905 (KHS93_03905) - 771650..772027 (+) 378 WP_003155597.1 DUF1992 domain-containing protein -
  KHS93_RS03910 (KHS93_03910) - 772037..772468 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  KHS93_RS03915 (KHS93_03915) - 772484..772726 (-) 243 WP_003155595.1 spore germination protein -
  KHS93_RS03920 (KHS93_03920) - 772741..773001 (-) 261 WP_007408496.1 spore germination protein -
  KHS93_RS03925 (KHS93_03925) treP 773273..774688 (+) 1416 WP_069473194.1 PTS system trehalose-specific EIIBC component -
  KHS93_RS03930 (KHS93_03930) treC 774764..776449 (+) 1686 WP_069473195.1 alpha,alpha-phosphotrehalase -
  KHS93_RS03935 (KHS93_03935) treR 776473..777189 (+) 717 WP_003155591.1 trehalose operon repressor Regulator
  KHS93_RS03940 (KHS93_03940) - 777323..777988 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  KHS93_RS03945 (KHS93_03945) - 778024..778785 (-) 762 WP_003155586.1 YibE/F family protein -
  KHS93_RS03950 (KHS93_03950) - 778782..779921 (-) 1140 WP_109567802.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27542.53 Da        Isoelectric Point: 6.9762

>NTDB_id=498767 KHS93_RS03935 WP_003155591.1 776473..777189(+) (treR) [Bacillus amyloliquefaciens strain SN16-1]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELSLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=498767 KHS93_RS03935 WP_003155591.1 776473..777189(+) (treR) [Bacillus amyloliquefaciens strain SN16-1]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCGGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCAGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424