Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KHS93_RS02255 Genome accession   NZ_CP075547
Coordinates   443756..444886 (+) Length   376 a.a.
NCBI ID   WP_014304380.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 438756..449886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS02215 (KHS93_02215) - 438757..438918 (+) 162 WP_154018559.1 hypothetical protein -
  KHS93_RS02220 (KHS93_02220) - 438974..439135 (+) 162 WP_014304372.1 hypothetical protein -
  KHS93_RS02225 (KHS93_02225) - 439237..439803 (+) 567 WP_224979435.1 DUF4145 domain-containing protein -
  KHS93_RS19705 - 439928..440191 (+) 264 WP_048367719.1 hypothetical protein -
  KHS93_RS02230 (KHS93_02230) - 440240..440494 (+) 255 Protein_405 phage terminase small subunit-related protein -
  KHS93_RS02235 (KHS93_02235) - 440785..440961 (+) 177 Protein_406 peptidoglycan-binding domain-containing protein -
  KHS93_RS02240 (KHS93_02240) - 441378..442145 (+) 768 WP_079890911.1 septation ring formation regulator EzrA -
  KHS93_RS02245 (KHS93_02245) - 442208..443341 (+) 1134 WP_025853743.1 hypothetical protein -
  KHS93_RS02250 (KHS93_02250) - 443417..443620 (+) 204 WP_228767510.1 DUF2651 family protein -
  KHS93_RS02255 (KHS93_02255) rapC 443756..444886 (+) 1131 WP_014304380.1 Rap family tetratricopeptide repeat protein Regulator
  KHS93_RS19860 - 444886..445020 (+) 135 WP_254922222.1 hypothetical protein -
  KHS93_RS19710 - 445381..445611 (-) 231 WP_015388689.1 hypothetical protein -
  KHS93_RS02260 (KHS93_02260) - 445992..446549 (-) 558 WP_044053286.1 hypothetical protein -
  KHS93_RS02265 (KHS93_02265) - 446645..447436 (-) 792 WP_228092402.1 hypothetical protein -
  KHS93_RS02270 (KHS93_02270) - 447443..447709 (-) 267 WP_003156241.1 hypothetical protein -
  KHS93_RS02275 (KHS93_02275) - 447815..449092 (-) 1278 WP_088037511.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44712.10 Da        Isoelectric Point: 5.2992

>NTDB_id=498763 KHS93_RS02255 WP_014304380.1 443756..444886(+) (rapC) [Bacillus amyloliquefaciens strain SN16-1]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=498763 KHS93_RS02255 WP_014304380.1 443756..444886(+) (rapC) [Bacillus amyloliquefaciens strain SN16-1]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(145-296)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.534

99.202

0.372