Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IRT44_RS13870 Genome accession   NZ_CP064048
Coordinates   2823840..2825570 (+) Length   576 a.a.
NCBI ID   WP_212132377.1    Uniprot ID   -
Organism   Brevibacillus sedimenti strain PCH 117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2818840..2830570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRT44_RS13850 (IRT44_13775) dxs 2819707..2821593 (+) 1887 WP_171565602.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IRT44_RS13855 (IRT44_13780) - 2821590..2822402 (+) 813 WP_212132376.1 TlyA family RNA methyltransferase -
  IRT44_RS13860 (IRT44_13785) - 2822512..2823369 (+) 858 WP_171565600.1 NAD(+)/NADH kinase -
  IRT44_RS13865 (IRT44_13790) ahrC 2823375..2823824 (+) 450 WP_171565599.1 transcriptional regulator AhrC/ArgR -
  IRT44_RS13870 (IRT44_13795) recN 2823840..2825570 (+) 1731 WP_212132377.1 DNA repair protein RecN Machinery gene
  IRT44_RS13875 (IRT44_13800) spoIVB 2825723..2827054 (+) 1332 WP_212132378.1 SpoIVB peptidase -
  IRT44_RS13880 (IRT44_13805) spo0A 2827486..2828274 (+) 789 WP_171565596.1 sporulation transcription factor Spo0A -
  IRT44_RS13885 (IRT44_13810) - 2828530..2828934 (+) 405 WP_230076852.1 ATP-binding protein -
  IRT44_RS13890 (IRT44_13815) - 2828957..2830435 (+) 1479 WP_409978421.1 ATP-binding protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64971.05 Da        Isoelectric Point: 4.8332

>NTDB_id=498747 IRT44_RS13870 WP_212132377.1 2823840..2825570(+) (recN) [Brevibacillus sedimenti strain PCH 117]
MLLELSIRNFAIIKSVTISFQRGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGETRAEVEGLFELPAGHPALALC
ESFGVAVEQDGTLVVRRDISSQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGEAELGPAK
KEYAQLYAAYKKTRQDLERMARNERELVQRIDLLQYQLNEIEAAALTPGEDEKLLKQRKKWMNIEKVYAGIQDAYRALYG
DQRGLDWLGHAMSELERIASYEEQLAPIVESVQSAYYQMEDVVQQLRQLSDQLDFEPEQLAEVEQRLDQIQNLKRKYGKN
VDDILEYAAAIQDELDEMQHYEDRLQQLEHRLSELAADLAVEAQELSVIRRECAERLAREIEQQLKDLHMERARFAIDVR
RVPDEDGIELEGAKWRVDANGIDQVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTLIFDEVDTGVSG
RAAQAIAEKLARVAQKRQVLCITHLPQVASLADAHFLIRKEMSEHETMTVVERLSDEERVKELARMLGGAEVTSKTEEHA
REMILLGQRRKAVNGV

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=498747 IRT44_RS13870 WP_212132377.1 2823840..2825570(+) (recN) [Brevibacillus sedimenti strain PCH 117]
ATGCTGTTGGAACTGTCCATTCGCAATTTTGCCATCATCAAATCGGTCACGATTTCCTTTCAACGCGGACTAAACATCCT
CACGGGGGAGACCGGCGCAGGGAAGTCAATCATCATCGACGCGCTCGGCCTGCTTCTTGGCGGGCGAGCTTCCGCAGACT
TTGTCCGTTACGGAGAGACGCGGGCTGAAGTGGAAGGGTTGTTTGAACTGCCCGCCGGCCACCCGGCGCTGGCCCTGTGC
GAGAGCTTCGGCGTCGCTGTGGAGCAGGACGGCACGCTGGTCGTGCGCCGCGACATCTCCAGCCAGGGCAAAAGCATCAT
CCGCATCAACGGCCAGTTGGTCACCCTGGCAATGCTGCGGGAGCTGGGGCCGTGGCTGGTGACCGTGCACGGCCAGCACG
ACACCCACATGCTGATGCAGGCGGACAAGCACATCAACTGGCTGGACGCGTACGGCGAGGCGGAGTTGGGCCCAGCCAAA
AAGGAGTACGCTCAGCTTTACGCCGCCTACAAAAAGACCAGACAGGACCTGGAGCGGATGGCTCGCAACGAGCGGGAACT
GGTGCAGCGGATTGACCTGCTTCAATACCAGTTGAACGAGATCGAGGCGGCCGCCCTGACCCCGGGGGAAGACGAGAAAC
TGCTCAAACAGCGAAAAAAATGGATGAACATTGAAAAGGTGTACGCCGGCATACAGGACGCCTACCGCGCCCTCTACGGC
GATCAGCGGGGACTTGATTGGCTCGGCCACGCGATGAGCGAGCTGGAGCGGATCGCGTCGTACGAAGAGCAGCTCGCGCC
GATTGTGGAATCGGTTCAGAGCGCATACTATCAGATGGAAGACGTGGTGCAGCAGCTTCGCCAGCTCAGCGACCAGCTTG
ACTTCGAACCGGAGCAGTTGGCGGAAGTGGAGCAGCGGCTTGACCAGATCCAGAACCTGAAACGCAAGTACGGCAAAAAC
GTGGACGACATTCTGGAGTACGCCGCTGCGATCCAGGACGAGCTGGACGAGATGCAGCACTATGAGGATCGCCTGCAGCA
GTTGGAGCACCGGCTGAGCGAACTGGCGGCCGATCTGGCCGTGGAAGCGCAGGAACTGTCCGTGATCCGCCGCGAATGCG
CCGAACGGCTGGCGCGGGAGATTGAGCAGCAGTTAAAAGATCTGCACATGGAACGGGCCCGTTTCGCAATCGACGTCCGC
CGGGTGCCGGATGAGGACGGGATTGAGCTGGAAGGTGCCAAATGGCGCGTCGATGCAAACGGCATTGATCAGGTGGAGTT
TCTCATCTCCCCCAACCCGGGCGAGCCGCTTCGTCCGCTGGCCAAGATCGCGTCTGGCGGAGAACTGTCCCGGGTCATGC
TGGCGATCAAGACGATCCTGGCCGGCACCGATCAGGTCCAGACGCTGATTTTCGACGAAGTGGATACCGGCGTGAGCGGC
AGGGCGGCCCAGGCGATTGCGGAGAAACTGGCCCGCGTGGCACAGAAACGGCAGGTTCTTTGCATCACCCATCTGCCGCA
GGTGGCATCGTTGGCTGACGCGCATTTCCTGATTCGCAAGGAAATGAGTGAGCACGAGACGATGACGGTGGTAGAGCGGC
TCTCCGACGAAGAGCGCGTCAAGGAGTTGGCCCGGATGCTGGGCGGTGCCGAAGTCACGTCCAAAACCGAAGAACATGCC
CGCGAAATGATTTTGCTGGGGCAACGACGAAAAGCTGTCAACGGCGTTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.617

98.438

0.498