Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   KHS93_RS00335 Genome accession   NZ_CP075547
Coordinates   60793..61023 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55793..66023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS00305 (KHS93_00305) ridA 55981..56361 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  KHS93_RS00310 (KHS93_00310) spoVG 56557..56850 (+) 294 WP_004264660.1 septation regulator SpoVG -
  KHS93_RS00315 (KHS93_00315) glmU 57042..58412 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KHS93_RS00320 (KHS93_00320) - 58434..59387 (+) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  KHS93_RS00325 (KHS93_00325) - 59472..60080 (+) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  KHS93_RS00330 (KHS93_00330) pth 60165..60731 (+) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  KHS93_RS00335 (KHS93_00335) subA/fin 60793..61023 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  KHS93_RS00340 (KHS93_00340) mfd 61093..64626 (+) 3534 WP_025854078.1 transcription-repair coupling factor -
  KHS93_RS00345 (KHS93_00345) spoVT 64763..65299 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=498746 KHS93_RS00335 WP_004264650.1 60793..61023(+) (subA/fin) [Bacillus amyloliquefaciens strain SN16-1]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=498746 KHS93_RS00335 WP_004264650.1 60793..61023(+) (subA/fin) [Bacillus amyloliquefaciens strain SN16-1]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCAACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868