Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   KHS93_RS00225 Genome accession   NZ_CP075547
Coordinates   42354..43181 (+) Length   275 a.a.
NCBI ID   WP_004264723.1    Uniprot ID   A7Z0F5
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 37354..48181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS00200 (KHS93_00200) - 38429..39862 (+) 1434 WP_004264741.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  KHS93_RS00205 (KHS93_00205) tmk 39859..40497 (+) 639 WP_004264737.1 dTMP kinase -
  KHS93_RS00210 (KHS93_00210) darA 40568..40897 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KHS93_RS00215 (KHS93_00215) - 40910..41350 (+) 441 WP_004264730.1 DUF327 family protein -
  KHS93_RS00220 (KHS93_00220) holB 41362..42351 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  KHS93_RS00225 (KHS93_00225) yaaT 42354..43181 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  KHS93_RS00230 (KHS93_00230) yabA 43196..43555 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  KHS93_RS00235 (KHS93_00235) - 43616..44359 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KHS93_RS00240 (KHS93_00240) - 44346..44645 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  KHS93_RS00245 (KHS93_00245) rsmI 44620..45501 (+) 882 WP_044052729.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KHS93_RS00250 (KHS93_00250) abrB 45551..45841 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31160.93 Da        Isoelectric Point: 4.6504

>NTDB_id=498744 KHS93_RS00225 WP_004264723.1 42354..43181(+) (yaaT) [Bacillus amyloliquefaciens strain SN16-1]
MYNVIGVRFKKAGKIYYFDPNGFDIEQDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFEVCQKKVADHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDLGEMITTANGPAKVVGLNI
LERVLQVELKNREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=498744 KHS93_RS00225 WP_004264723.1 42354..43181(+) (yaaT) [Bacillus amyloliquefaciens strain SN16-1]
TTGTACAACGTAATAGGCGTCCGCTTTAAAAAAGCGGGGAAAATTTATTATTTTGATCCGAATGGATTTGATATAGAACA
AGACAGCTGCGTCATTGTTGAAACCGTAAGAGGTGTAGAATACGGGCAGGTTGTCATCGCAAATAAACAAGTGGACGAGC
ATGATGTTGTGCTTCCGCTTCGAAAGGTTATTCGCGTTGCTGATGAACGCGATCTTCTCATTGTAGAAGAAAACAAACAG
GAGGCCCTGTCCGCTTTTGAAGTCTGTCAGAAAAAAGTGGCTGACCACGGCTTAGATATGAAGCTGGTTGATGTTGAATT
TACGTTTGACCGCAATAAAGTCATTTTTTACTTTACGGCAGACGGACGGGTTGATTTCAGGGAATTGGTCAAAGACTTGG
CTTCTATCTTTAAAACGAGAATCGAATTGCGTCAAATCGGGGTAAGGGACGAGGCGAAAATGCTCGGCGGTATCGGACCA
TGCGGGAGAATGCTTTGCTGCTCCACGTTCCTCGGTGATTTTGAACCGGTGTCCATCAAAATGGCGAAGGATCAAAATTT
ATCGTTGAACCCAACGAAGATTTCCGGTCTGTGCGGCCGTTTGATGTGCTGTTTGAAGTATGAAAATGATGAGTATGAGA
CGGCAAAAGAACAGCTGCCGGATTTAGGCGAAATGATTACGACGGCAAACGGCCCCGCAAAGGTTGTCGGTCTTAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGAAGAATCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

96.727

100

0.967