Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IRT44_RS06200 Genome accession   NZ_CP064048
Coordinates   1294656..1296023 (+) Length   455 a.a.
NCBI ID   WP_171567136.1    Uniprot ID   -
Organism   Brevibacillus sedimenti strain PCH 117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289656..1301023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRT44_RS06180 (IRT44_06125) - 1289917..1290381 (+) 465 WP_230077635.1 CtsR family transcriptional regulator -
  IRT44_RS06185 (IRT44_06130) - 1290427..1290942 (+) 516 WP_171567133.1 UvrB/UvrC motif-containing protein -
  IRT44_RS06190 (IRT44_06135) - 1290964..1292025 (+) 1062 WP_171567134.1 protein arginine kinase -
  IRT44_RS06195 (IRT44_06140) - 1292105..1294555 (+) 2451 WP_171567135.1 ATP-dependent Clp protease ATP-binding subunit -
  IRT44_RS06200 (IRT44_06145) radA 1294656..1296023 (+) 1368 WP_171567136.1 DNA repair protein RadA Machinery gene
  IRT44_RS06205 (IRT44_06150) disA 1296033..1297108 (+) 1076 Protein_1202 DNA integrity scanning diadenylate cyclase DisA -
  IRT44_RS06210 (IRT44_06155) pssA 1297220..1297948 (+) 729 WP_171567138.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  IRT44_RS06215 (IRT44_06160) - 1298108..1298503 (-) 396 WP_171567139.1 DUF1573 domain-containing protein -
  IRT44_RS06220 (IRT44_06165) - 1298794..1299884 (+) 1091 Protein_1205 PIN/TRAM domain-containing protein -
  IRT44_RS06225 (IRT44_06170) ispD 1299906..1300598 (+) 693 WP_230077636.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49579.25 Da        Isoelectric Point: 7.1011

>NTDB_id=498735 IRT44_RS06200 WP_171567136.1 1294656..1296023(+) (radA) [Brevibacillus sedimenti strain PCH 117]
MSKYKTKYACQECGYESPKWMGKCPGCNKWNTMVEEVAVKSSHRYELTVGRQRTEAMPLTQVASEEEPRMDTRLGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGLKVLYVSGEESAKQIKLRADRLGMNTPPMYVLAENDLELIEQHI
NHIDPHVLIIDSIQTVFHPAVQSAAGSVAQVREATAQLMRIAKGKGIATFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLAEVGNPSEIFLAERPIGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRMATGVDHQRVAMIMAVLEKRMGLMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDQPTNPHDVVIGEVGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLEVPTGIDVIGISNIADALDEVLRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=498735 IRT44_RS06200 WP_171567136.1 1294656..1296023(+) (radA) [Brevibacillus sedimenti strain PCH 117]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCCAAATGGATGGGCAAATGCCCGGGTTG
CAACAAGTGGAACACGATGGTCGAAGAAGTGGCGGTCAAATCGTCTCACCGGTACGAGCTGACGGTTGGCAGGCAGCGTA
CGGAAGCCATGCCGCTGACGCAGGTGGCGAGCGAGGAAGAACCGCGGATGGATACGAGGCTCGGCGAATTGAACCGCGTA
TTGGGCGGCGGACTTGTTCCCGGGTCGCTGATTCTTGTCGGCGGGGATCCCGGGATTGGCAAATCAACCCTGCTGCTGCA
GACGTCGTTTGCGCTCGCCCATCAGGGGTTAAAAGTACTGTACGTCTCCGGCGAGGAGTCGGCGAAGCAGATCAAGCTGC
GGGCCGACCGCCTCGGGATGAATACTCCGCCCATGTACGTGTTGGCGGAAAACGACTTGGAACTGATCGAACAGCATATT
AATCATATAGATCCGCATGTGTTGATTATTGACTCGATACAAACCGTGTTTCACCCCGCCGTTCAGTCTGCGGCGGGCAG
CGTGGCGCAGGTGCGGGAGGCGACTGCCCAGCTGATGCGCATTGCCAAGGGCAAGGGCATCGCCACCTTCATCGTCGGCC
ACGTGACCAAGGAAGGTTCCATCGCCGGCCCCCGCATGCTGGAGCACATGGTGGATGCCGTGCTTTACTTTGAAGGGGAG
CGGCACAACACCTTCCGCATCTTGCGGGCGGTGAAAAACCGCTTTGGCTCCACCAACGAGATCGGGATTTTTGAGATGAA
AGATCGTGGCTTGGCAGAAGTGGGCAATCCGTCGGAAATCTTTCTCGCGGAACGGCCCATCGGCGTCGCTGGTTCCACGG
TGGTGGCCAGCATGGAAGGGACGCGGCCGGTGCTGGTGGAACTGCAGGCGCTGGTGGCCCCCACCAGCTTTGTAACACCC
CGCCGGATGGCGACCGGGGTGGATCATCAGCGCGTGGCCATGATTATGGCTGTGCTGGAAAAGCGCATGGGACTGATGCT
GCAAAACCAGGATGCGTACGTCAACGTGGCTGGCGGCGTGCGGCTGGATGAGCCGGCCGTCGACTTGGCGATTGCCGTCA
GCATCGCCAGCAGCTTCCGCGATCAGCCGACCAATCCACATGACGTCGTCATCGGTGAAGTGGGGCTGACGGGCGAAGTG
CGCGGCGTTTCCCGGATCGAACAGCGGGTCAGGGAAGCCCACAAGCTGGGGTTCAAGCGGGTGATCATTCCGGAAAAGAA
CATCCGCGGCTTGGAAGTCCCGACCGGCATAGACGTAATCGGCATCAGCAACATAGCCGATGCTTTGGACGAGGTGCTAA
GGGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.675
  radA Streptococcus pneumoniae Rx1

58.499

99.56

0.582
  radA Streptococcus pneumoniae D39

58.499

99.56

0.582
  radA Streptococcus pneumoniae R6

58.499

99.56

0.582
  radA Streptococcus pneumoniae TIGR4

58.499

99.56

0.582
  radA Streptococcus mitis NCTC 12261

58.499

99.56

0.582
  radA Streptococcus mitis SK321

58.499

99.56

0.582