Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KIK01_RS08190 Genome accession   NZ_CP075489
Coordinates   1602803..1603609 (-) Length   268 a.a.
NCBI ID   WP_061827272.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1597803..1608609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS08165 (KIK01_08165) - 1598199..1598630 (+) 432 WP_016265507.1 GNAT family N-acetyltransferase -
  KIK01_RS08170 (KIK01_08170) - 1598706..1599179 (+) 474 WP_011375164.1 hypothetical protein -
  KIK01_RS08175 (KIK01_08175) - 1599321..1601021 (+) 1701 WP_250130351.1 glycosyltransferase family 8 protein -
  KIK01_RS08180 (KIK01_08180) - 1601090..1601626 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  KIK01_RS08185 (KIK01_08185) mutY 1601713..1602816 (-) 1104 WP_016265509.1 A/G-specific adenine glycosylase -
  KIK01_RS08190 (KIK01_08190) recX 1602803..1603609 (-) 807 WP_061827272.1 recombination regulator RecX Regulator
  KIK01_RS08195 (KIK01_08195) - 1603611..1603790 (-) 180 WP_011375169.1 hypothetical protein -
  KIK01_RS08200 (KIK01_08200) rlmD 1604055..1605446 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  KIK01_RS08205 (KIK01_08205) - 1605662..1606168 (-) 507 WP_011375171.1 DUF805 domain-containing protein -
  KIK01_RS08210 (KIK01_08210) - 1606259..1606729 (+) 471 WP_016265513.1 nucleoside 2-deoxyribosyltransferase -
  KIK01_RS08215 (KIK01_08215) - 1606816..1607058 (+) 243 WP_076639012.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31086.03 Da        Isoelectric Point: 6.0698

>NTDB_id=498734 KIK01_RS08190 WP_061827272.1 1602803..1603609(-) (recX) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITLEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=498734 KIK01_RS08190 WP_061827272.1 1602803..1603609(-) (recX) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGTGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCTAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.262

98.134

0.366