Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KIK01_RS06025 Genome accession   NZ_CP075489
Coordinates   1191602..1193341 (-) Length   579 a.a.
NCBI ID   WP_213923220.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186602..1198341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS06005 (KIK01_06005) pdhA 1186623..1187732 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  KIK01_RS06010 (KIK01_06010) - 1188056..1188739 (-) 684 WP_016265228.1 hypothetical protein -
  KIK01_RS06015 (KIK01_06015) def 1189246..1189803 (+) 558 WP_011374787.1 peptide deformylase -
  KIK01_RS06020 (KIK01_06020) rcrQ 1189852..1191615 (-) 1764 WP_213923219.1 ABC transporter ATP-binding protein Regulator
  KIK01_RS06025 (KIK01_06025) rcrP 1191602..1193341 (-) 1740 WP_213923220.1 ABC transporter ATP-binding protein Regulator
  KIK01_RS06030 (KIK01_06030) - 1193369..1193854 (-) 486 WP_016265231.1 hypothetical protein -
  KIK01_RS06035 (KIK01_06035) - 1194051..1194263 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  KIK01_RS06040 (KIK01_06040) - 1194268..1195956 (+) 1689 WP_016265232.1 ribonuclease J -
  KIK01_RS06045 (KIK01_06045) - 1196089..1197054 (+) 966 WP_016265233.1 diacylglycerol kinase family protein -
  KIK01_RS06050 (KIK01_06050) thiW 1197104..1197610 (-) 507 WP_025015722.1 energy coupling factor transporter S component ThiW -
  KIK01_RS06055 (KIK01_06055) tenA 1197600..1198286 (-) 687 WP_016265235.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64637.13 Da        Isoelectric Point: 9.1434

>NTDB_id=498714 KIK01_RS06025 WP_213923220.1 1191602..1193341(-) (rcrP) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQATTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPDGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKEATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=498714 KIK01_RS06025 WP_213923220.1 1191602..1193341(-) (rcrP) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTGTTATTTTGGAATTTTATCTGCGTATTTGGGTTTATTTT
AATTGAACTGGGATTACCAACATTATTAGGACAAATTATCGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTCGTCATTTCCCTGATTGGCCTAGTGGGTTTGATCGGCTTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACGCGTGATATCCGGAACGATATCTTTAAAAAAACGATGCAATTTTCACATCATGAATATGGTGAGTT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACTG
GTTTTATGACCCCGATGATGATCGTCGCCAGTGCCTTCATGATTGTGCGGACGAGTCTGTCATTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTTATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGTGTTATTCGCGCGTTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAACACGGGTCACTT
GGCAGTGGGGACGTTAATTGCCTTTATTGAATACATTTTCCACGTACTATTTTCATTCATGCTCTTTGCGAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCTGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAGCCACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTTATTCGGGATGTCAGTTTTAAAGCCCATCCAGGTGAAACTGTCGCCTTCATCGGTAGTACAGGGAGTGGTAAAT
CAACCTTAATCCAATTGATTCCACGCTTTTTCGATGTGACACGGGGGCAAGTGATGATTGATGGTTATGATGTTCGTGAT
TATCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCCCAAAAGGCGGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCGACGGATGCTGAGCTATGGGATGCTTTGACGATTGCCCAATCCAAAACGTTTGTGG
CGGAAAAACCAGATGGTCTTCAAACTTATTTGGCCGAAGGAGGTAACAACTTATCAGGTGGTCAAAAGCAACGACTAGCG
ATTGCCAGAGCAATTGTTCGTCGTCCGGATATCTACGTCTTTGACGATAGTTTTTCAGCCTTGGATTACCAAACAGACGC
AGCATTACGAGGCGCTTTAAAATCGATTACGAAAGAGGCAACCGTCTTAATTGTCGCCCAACGTGTGGGGACGATTATGA
ATGCAGATCGGATTGTCGTCTTAAATGAAGGACAAGTTGTGGGCATCGGTACCCACAAAGAATTACTTAAAACAAATGAG
GTTTACCGGGCCATTGCCGCCTCACAGTTGTCAAAGGAGGAGCTCAATGAAGAATATTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.986

100

0.416