Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KIK01_RS06020 Genome accession   NZ_CP075489
Coordinates   1189852..1191615 (-) Length   587 a.a.
NCBI ID   WP_213923219.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184852..1196615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS06000 (KIK01_06000) - 1185644..1186621 (-) 978 WP_213923218.1 alpha-ketoacid dehydrogenase subunit beta -
  KIK01_RS06005 (KIK01_06005) pdhA 1186623..1187732 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  KIK01_RS06010 (KIK01_06010) - 1188056..1188739 (-) 684 WP_016265228.1 hypothetical protein -
  KIK01_RS06015 (KIK01_06015) def 1189246..1189803 (+) 558 WP_011374787.1 peptide deformylase -
  KIK01_RS06020 (KIK01_06020) rcrQ 1189852..1191615 (-) 1764 WP_213923219.1 ABC transporter ATP-binding protein Regulator
  KIK01_RS06025 (KIK01_06025) rcrP 1191602..1193341 (-) 1740 WP_213923220.1 ABC transporter ATP-binding protein Regulator
  KIK01_RS06030 (KIK01_06030) - 1193369..1193854 (-) 486 WP_016265231.1 hypothetical protein -
  KIK01_RS06035 (KIK01_06035) - 1194051..1194263 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  KIK01_RS06040 (KIK01_06040) - 1194268..1195956 (+) 1689 WP_016265232.1 ribonuclease J -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65060.55 Da        Isoelectric Point: 6.2481

>NTDB_id=498713 KIK01_RS06020 WP_213923219.1 1189852..1191615(-) (rcrQ) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MKNIRVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPASFLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPAAVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMAIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETNLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=498713 KIK01_RS06020 WP_213923219.1 1189852..1191615(-) (rcrQ) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGAAGAATATTAGGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCACTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGCTACATTACTAAAGTCATTGCGATGATTCTCAGTTTTGCATTACTTTATCAAACG
ATGATGTTTTTAGGGTCATTTTTAATGACGCGTGCAGTGCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGTAATATCTTGTCGCGAGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATCCAAGTTGTGACTTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCAGCCTCATTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGACAACAAAACACCTTGGGTGAAATGAACGGTTATGTTCAGGAAAATTATGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTC
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTTTAACGACTAATCTAACCTACGCTGGGATGGC
AACCTTGGGTGGTTACTACGTCTTGCACGGTGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCGATTTCGCAAATCACGCAGTTATCAGGTGTCATGCAAGCTGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGCTGCCGTCCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGTTATGATCCAGCCAAACCGTTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGCGATAAAATTG
CGATCGTTGGGCCAACCGGTGCCGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACGCGCCAGTTGAGTAAACAAACAGTACGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCTACCGAATATGAAGTCGTGGATGCTG
CCAAAACGGCCAATGTTGATCACTTCATCCATACGTTGCCAAATGGTTATCAGATGGCAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGGCAAAAGCAACTCCTAACAATTGCCCGGGCAGTCATTGCTAACCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCGGTCGATACGCGATTAGAAAGCTTATTGCAAAAGGCGATGGAAAAGGTGATGCAGGGTCGAACCAGTTTTG
TGATCGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAATTTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.077

99.659

0.429