Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KIK01_RS05130 Genome accession   NZ_CP075489
Coordinates   1005070..1005702 (-) Length   210 a.a.
NCBI ID   WP_011374620.1    Uniprot ID   Q38X61
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1000070..1010702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS05115 (KIK01_05115) - 1001386..1002009 (+) 624 WP_016265075.1 DnaD domain protein -
  KIK01_RS05120 (KIK01_05120) nth 1002033..1002683 (+) 651 WP_016265076.1 endonuclease III -
  KIK01_RS05125 (KIK01_05125) - 1002760..1005063 (-) 2304 WP_016265077.1 PBP1A family penicillin-binding protein -
  KIK01_RS05130 (KIK01_05130) recU 1005070..1005702 (-) 633 WP_011374620.1 Holliday junction resolvase RecU Machinery gene
  KIK01_RS05135 (KIK01_05135) - 1005778..1006338 (+) 561 WP_016265078.1 DUF1273 domain-containing protein -
  KIK01_RS05140 (KIK01_05140) gpsB 1006418..1006798 (+) 381 WP_016265079.1 cell division regulator GpsB -
  KIK01_RS05150 (KIK01_05150) - 1007288..1008439 (+) 1152 WP_025015790.1 class I SAM-dependent RNA methyltransferase -
  KIK01_RS05155 (KIK01_05155) - 1008542..1009495 (+) 954 WP_016265081.1 phosphoglycerate dehydrogenase -
  KIK01_RS05160 (KIK01_05160) - 1009551..1009940 (-) 390 WP_016265082.1 DUF1398 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24128.39 Da        Isoelectric Point: 9.4518

>NTDB_id=498701 KIK01_RS05130 WP_011374620.1 1005070..1005702(-) (recU) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPASLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV

Nucleotide


Download         Length: 633 bp        

>NTDB_id=498701 KIK01_RS05130 WP_011374620.1 1005070..1005702(-) (recU) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATACGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCCACCACCGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGTGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTGCAACGTTTATTTGTGTATCCGGCAAGCTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(35-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

94.762

0.467