Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KIK01_RS03925 Genome accession   NZ_CP075489
Coordinates   766222..767925 (+) Length   567 a.a.
NCBI ID   WP_076647386.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761222..772925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS03895 (KIK01_03895) folD 761501..762355 (+) 855 WP_076647377.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  KIK01_RS03900 (KIK01_03900) xseA 762348..763697 (+) 1350 WP_076647380.1 exodeoxyribonuclease VII large subunit -
  KIK01_RS03905 (KIK01_03905) - 763699..763929 (+) 231 WP_011374387.1 exodeoxyribonuclease VII small subunit -
  KIK01_RS03910 (KIK01_03910) - 763929..764801 (+) 873 WP_076647383.1 polyprenyl synthetase family protein -
  KIK01_RS03915 (KIK01_03915) - 764810..765640 (+) 831 WP_016264855.1 TlyA family RNA methyltransferase -
  KIK01_RS03920 (KIK01_03920) argR 765720..766172 (+) 453 WP_025015872.1 arginine repressor -
  KIK01_RS03925 (KIK01_03925) recN 766222..767925 (+) 1704 WP_076647386.1 DNA repair protein RecN Machinery gene
  KIK01_RS03930 (KIK01_03930) - 767984..768307 (-) 324 WP_076647389.1 hypothetical protein -
  KIK01_RS03935 (KIK01_03935) - 768427..768654 (+) 228 WP_197704094.1 YdbC family protein -
  KIK01_RS03940 (KIK01_03940) gmk 768727..769338 (+) 612 WP_011374394.1 guanylate kinase -
  KIK01_RS03945 (KIK01_03945) rpoZ 769343..769600 (+) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  KIK01_RS03950 (KIK01_03950) coaBC 769689..770906 (+) 1218 WP_076647391.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63252.22 Da        Isoelectric Point: 4.6999

>NTDB_id=498690 KIK01_RS03925 WP_076647386.1 766222..767925(+) (recN) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENGTTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILTYGAQITKELQAMQATEANASELEQQFEQQQAQLLQEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDDQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=498690 KIK01_RS03925 WP_076647386.1 766222..767925(+) (recN) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACTGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTACTCGCTGGTGGTCGGGGGTCACAGGATT
TCATCCGAACCGGTGCGAAAAAAGCGACATTAGAGGGCTTGTTTACATTACCCGAAAACGGCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACATGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAACACCACGACGCTTAAAAAGATTGGGGAAACATTAGTCGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAAAAGCAACAAAATGAGCAAGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCCGCGCAGTTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAG
GAAGGCAACGCGCTAGATCAAATCGCGATTGCAATGAATCAGATGCAAGAAATCGCGGAATTAGATCCTGAATTCAAAAG
AATTGCCGATAATCTACAAACAGGCTATTACACATTGCAAGATAGTGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAGGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACGATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAACTTATGGGGCGCAAATTACCAAAGAATTGCAAGCGATGCAGGCCACAGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGCAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCAGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATGACCAGCAATTTATGCGCAGTGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCACTTGCCAAGACTGCTTCTGGTGGGGAATTATCTCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCGATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464