Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   H9J98_RS23415 Genome accession   NZ_CP064042
Coordinates   1562532..1563629 (-) Length   365 a.a.
NCBI ID   WP_222133501.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain XMO116     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557532..1568629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS23400 (H9J98_23260) - 1558196..1559251 (-) 1056 WP_045606636.1 HlyD family secretion protein -
  H9J98_RS23405 (H9J98_23265) - 1559289..1559744 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  H9J98_RS23410 (H9J98_23270) luxQ 1559956..1562532 (-) 2577 WP_140093567.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  H9J98_RS23415 (H9J98_23275) luxP 1562532..1563629 (-) 1098 WP_222133501.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  H9J98_RS23420 (H9J98_23280) - 1563981..1564301 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  H9J98_RS23425 (H9J98_23285) - 1564298..1564948 (-) 651 WP_017447360.1 YceH family protein -
  H9J98_RS23430 (H9J98_23290) - 1565127..1565342 (-) 216 WP_222133513.1 hypothetical protein -
  H9J98_RS23435 (H9J98_23295) - 1565669..1565983 (+) 315 WP_005453573.1 DUF496 family protein -
  H9J98_RS23440 (H9J98_23300) - 1566106..1567443 (+) 1338 WP_222133514.1 MATE family efflux transporter -
  H9J98_RS23445 (H9J98_23305) - 1567517..1568494 (-) 978 WP_029864906.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41367.73 Da        Isoelectric Point: 5.0568

>NTDB_id=498673 H9J98_RS23415 WP_222133501.1 1562532..1563629(-) (luxP) [Vibrio parahaemolyticus strain XMO116]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALVAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=498673 H9J98_RS23415 WP_222133501.1 1562532..1563629(-) (luxP) [Vibrio parahaemolyticus strain XMO116]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGTTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACCGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641