Detailed information NTG0498670

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: KIK01_RS01355
• Genome accession: NZ_CP075489
• Coordinates: 257849..259972 (+)
• Length: 707 a.a.
• NCBI ID: WP_016264495.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei strain ob4.1
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 252849..264972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIK01_RS01335 (KIK01_01335)	-	253174..253524 (-)	351	WP_035144477.1	metalloregulator ArsR/SmtB family transcription factor	-
KIK01_RS01340 (KIK01_01340)	-	253562..254170 (+)	609	WP_016264491.1	cadmium resistance transporter	-
KIK01_RS01345 (KIK01_01345)	-	254388..254873 (-)	486	WP_213923399.1	TetR/AcrR family transcriptional regulator	-
KIK01_RS01350 (KIK01_01350)	-	254980..257568 (+)	2589	WP_099960161.1	hydrophobe/amphiphile efflux-3 (HAE3) family transporter	-
KIK01_RS01355 (KIK01_01355)	clpE	257849..259972 (+)	2124	WP_016264495.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
KIK01_RS01360 (KIK01_01360)	-	260007..260543 (+)	537	WP_016264496.1	DUF308 domain-containing protein	-
KIK01_RS01365 (KIK01_01365)	-	260613..261230 (-)	618	WP_096585617.1	DUF1361 domain-containing protein	-
KIK01_RS01370 (KIK01_01370)	-	261427..262419 (+)	993	WP_099960162.1	choloylglycine hydrolase family protein	-

Sequence

Protein

• Length: 707 a.a.
• Molecular weight: 78445.88 Da
• Isoelectric Point: 4.7412

>NTDB_id=498670 KIK01_RS01355 WP_016264495.1 257849..259972(+) (clpE) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN

Nucleotide

• Length: 2124 bp

>NTDB_id=498670 KIK01_RS01355 WP_016264495.1 257849..259972(+) (clpE) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAACGGTGAACACGCTCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGGAACTTAACACAGGAAGCACGGGATGGTTTATTAGATCCTGTCATTGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACTGCAGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCGCTAGAAGCCGGGACACAATATCGGGGCTCATTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGAATTGGTTCAACTGGTGGTGAAGATGGTGGCAAAGGGT
TAGCCGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATATCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTTAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCAGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCTGTAATGATTGCGACTGTTGATGATATTGCGCAATCGGTTGAAAGATTAACTGGGATTCCCGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGTCAACGGTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCACGCGCAATTCGCAGAAATCGGGCAGGTTTTTCTGAAGGCAACCAACCAATTGGCAGTTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCCGTTTCTAAATTGATTGGGACGACAGCCGGTTATGTTGGCTATGA
CGATAATTCGAATACATTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACTAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA lid domain (AAA_lid_9) (262-359)

• AAA domain (Cdc48 subfamily) (AAA_2) (446-605)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (613-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	49.214	89.958	0.443
clpC	Lactococcus lactis subsp. cremoris KW2	48.889	89.109	0.436
clpE	Streptococcus pneumoniae Rx1	47.504	87.836	0.417
clpE	Streptococcus pneumoniae D39	47.504	87.836	0.417
clpE	Streptococcus pneumoniae R6	47.504	87.836	0.417
clpE	Streptococcus pneumoniae TIGR4	47.343	87.836	0.416
clpC	Streptococcus pneumoniae Rx1	43.862	94.484	0.414
clpC	Streptococcus pneumoniae D39	43.862	94.484	0.414
clpC	Streptococcus pneumoniae TIGR4	44.154	91.938	0.406
clpC	Bacillus subtilis subsp. subtilis str. 168	45.032	88.26	0.397
clpC	Streptococcus thermophilus LMD-9	44.75	87.553	0.392
clpC	Streptococcus thermophilus LMG 18311	44.013	87.412	0.385
clpC	Streptococcus mutans UA159	43.851	87.412	0.383
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.64	87.977	0.366