Detailed information NTG0498664

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H9J98_RS15100
• Genome accession: NZ_CP064041
• Coordinates: 3221770..3222816 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain XMO116
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3216770..3227816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9J98_RS15080 (H9J98_14950)	rplC	3217343..3217972 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
H9J98_RS15085 (H9J98_14955)	rpsJ	3217987..3218298 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
H9J98_RS15090 (H9J98_14960)	rpmE	3218756..3218977 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
H9J98_RS15095 (H9J98_14965)	priA	3219272..3221476 (+)	2205	WP_228084313.1	primosomal protein N'	-
H9J98_RS15100 (H9J98_14970)	cytR	3221770..3222816 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
H9J98_RS15105 (H9J98_14975)	ftsN	3222992..3223537 (+)	546	WP_005481405.1	cell division protein FtsN	-
H9J98_RS15110 (H9J98_14980)	hslV	3223702..3224253 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
H9J98_RS15115 (H9J98_14985)	hslU	3224277..3225608 (+)	1332	WP_140355101.1	HslU--HslV peptidase ATPase subunit	-
H9J98_RS15120 (H9J98_14990)	-	3225793..3226710 (+)	918	WP_017449001.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H9J98_RS15125 (H9J98_14995)	rraA	3226787..3227299 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
H9J98_RS15130 (H9J98_15000)	zapB	3227404..3227646 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=498664 H9J98_RS15100 WP_254894148.1 3221770..3222816(+) (cytR) [Vibrio parahaemolyticus strain XMO116]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=498664 H9J98_RS15100 WP_254894148.1 3221770..3222816(+) (cytR) [Vibrio parahaemolyticus strain XMO116]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871