Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   H9K44_RS22340 Genome accession   NZ_CP064036
Coordinates   1491461..1492642 (+) Length   393 a.a.
NCBI ID   WP_021450908.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486461..1497642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS22325 (H9K44_22280) - 1486730..1488970 (+) 2241 WP_169610081.1 M9 family metallopeptidase -
  H9K44_RS22330 (H9K44_22285) - 1489150..1489887 (+) 738 WP_169609973.1 EAL domain-containing protein -
  H9K44_RS22335 (H9K44_22290) ylqF 1490163..1491107 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  H9K44_RS22340 (H9K44_22295) cqsA 1491461..1492642 (+) 1182 WP_021450908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  H9K44_RS22345 (H9K44_22300) cqsS 1492720..1494768 (-) 2049 WP_069504509.1 hybrid sensor histidine kinase/response regulator Regulator
  H9K44_RS22350 (H9K44_22305) - 1495088..1495705 (+) 618 WP_005498603.1 HAD family phosphatase -
  H9K44_RS22355 (H9K44_22310) - 1495792..1496340 (-) 549 WP_005481267.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43824.14 Da        Isoelectric Point: 6.4984

>NTDB_id=498625 H9K44_RS22340 WP_021450908.1 1491461..1492642(+) (cqsA) [Vibrio parahaemolyticus strain DLM1799]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=498625 H9K44_RS22340 WP_021450908.1 1491461..1492642(+) (cqsA) [Vibrio parahaemolyticus strain DLM1799]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGTATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGATTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCTACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578