Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IGI26_RS09225 Genome accession   NZ_CP075487
Coordinates   1808351..1809778 (-) Length   475 a.a.
NCBI ID   WP_000980601.1    Uniprot ID   -
Organism   Escherichia coli strain NT1F34     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803351..1814778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI26_RS09195 yeeZ 1803407..1804231 (+) 825 WP_174584302.1 SDR family oxidoreductase -
  IGI26_RS09200 yeeY 1804277..1805206 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IGI26_RS09205 yoeI 1805421..1805483 (+) 63 WP_010723108.1 membrane protein YoeI -
  IGI26_RS09210 plaP 1805473..1806831 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IGI26_RS09215 tsuA 1807010..1808067 (+) 1058 Protein_1680 thiosulfate utilization transporter TsuA/YeeE -
  IGI26_RS09220 tsuB 1808081..1808308 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IGI26_RS09225 sbcB 1808351..1809778 (-) 1428 WP_000980601.1 exodeoxyribonuclease I Machinery gene
  IGI26_RS09230 dacD 1809987..1811153 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IGI26_RS09235 sbmC 1811272..1811745 (+) 474 WP_016246080.1 DNA gyrase inhibitor SbmC -
  IGI26_RS09240 yeeA 1811944..1813002 (+) 1059 WP_001200892.1 FUSC family protein -
  IGI26_RS09245 tmaR 1813174..1813503 (+) 330 WP_000450409.1 DUF496 family protein -
  IGI26_RS23495 - 1813604..1813969 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  IGI26_RS09255 - 1814241..1814630 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54428.71 Da        Isoelectric Point: 5.4700

>NTDB_id=498612 IGI26_RS09225 WP_000980601.1 1808351..1809778(-) (sbcB) [Escherichia coli strain NT1F34]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=498612 IGI26_RS09225 WP_000980601.1 1808351..1809778(-) (sbcB) [Escherichia coli strain NT1F34]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583