Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H9K44_RS03075 Genome accession   NZ_CP064035
Coordinates   634959..635477 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 629959..640477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS03065 (H9K44_03070) gshA 632694..634259 (+) 1566 WP_025518038.1 glutamate--cysteine ligase -
  H9K44_RS03070 (H9K44_03075) - 634287..634892 (+) 606 WP_023585955.1 hypothetical protein -
  H9K44_RS03075 (H9K44_03080) luxS 634959..635477 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  H9K44_RS03080 (H9K44_03085) - 635539..636819 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  H9K44_RS03085 (H9K44_03090) - 636945..637739 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  H9K44_RS03090 (H9K44_03095) ffh 637952..639343 (+) 1392 WP_045586564.1 signal recognition particle protein -
  H9K44_RS03095 (H9K44_03100) rpsP 639553..639801 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  H9K44_RS03100 (H9K44_03105) rimM 639830..640378 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=498599 H9K44_RS03075 WP_005462534.1 634959..635477(+) (luxS) [Vibrio parahaemolyticus strain DLM1799]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=498599 H9K44_RS03075 WP_005462534.1 634959..635477(+) (luxS) [Vibrio parahaemolyticus strain DLM1799]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884