Detailed information NTG0498596

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9K44_RS02945
• Genome accession: NZ_CP064035
• Coordinates: 612374..613363 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain DLM1799
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 607374..618363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K44_RS02910 (H9K44_02915)	ftsB	607382..607663 (+)	282	WP_005455577.1	cell division protein FtsB	-
H9K44_RS02915 (H9K44_02920)	ispD	607665..608369 (+)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9K44_RS02920 (H9K44_02925)	ispF	608387..608863 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9K44_RS02925 (H9K44_02930)	truD	608910..609953 (+)	1044	WP_169608834.1	tRNA pseudouridine(13) synthase TruD	-
H9K44_RS02930 (H9K44_02935)	surE	609953..610729 (+)	777	WP_169608831.1	5'/3'-nucleotidase SurE	-
H9K44_RS02935 (H9K44_02940)	-	610729..611355 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H9K44_RS02940 (H9K44_02945)	-	611370..612293 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
H9K44_RS02945 (H9K44_02950)	rpoS	612374..613363 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
H9K44_RS02950 (H9K44_02955)	mutS	613442..616003 (-)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
H9K44_RS02955 (H9K44_02960)	pncC	616088..616570 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
H9K44_RS02960 (H9K44_02965)	recA	616771..617814 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=498596 H9K44_RS02945 WP_005478537.1 612374..613363(+) (rpoS) [Vibrio parahaemolyticus strain DLM1799]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=498596 H9K44_RS02945 WP_005478537.1 612374..613363(+) (rpoS) [Vibrio parahaemolyticus strain DLM1799]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851