Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H9K44_RS01655 Genome accession   NZ_CP064035
Coordinates   352397..352912 (+) Length   171 a.a.
NCBI ID   WP_025525190.1    Uniprot ID   A0A7Y0XBW6
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347397..357912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS01635 (H9K44_01640) - 347530..350100 (-) 2571 WP_140268153.1 PBP1A family penicillin-binding protein -
  H9K44_RS01640 (H9K44_01645) pilM 350243..351259 (+) 1017 WP_017449463.1 type IV pilus assembly protein PilM Machinery gene
  H9K44_RS01645 (H9K44_01650) pilN 351243..351821 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  H9K44_RS01650 (H9K44_01655) pilO 351814..352407 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  H9K44_RS01655 (H9K44_01660) pilP 352397..352912 (+) 516 WP_025525190.1 pilus assembly protein PilP Machinery gene
  H9K44_RS01660 (H9K44_01665) pilQ 352944..354692 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  H9K44_RS01665 (H9K44_01670) aroK 354881..355399 (+) 519 WP_005381319.1 shikimate kinase AroK -
  H9K44_RS01670 (H9K44_01675) aroB 355431..356531 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18944.09 Da        Isoelectric Point: 10.5314

>NTDB_id=498589 H9K44_RS01655 WP_025525190.1 352397..352912(+) (pilP) [Vibrio parahaemolyticus strain DLM1799]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=498589 H9K44_RS01655 WP_025525190.1 352397..352912(+) (pilP) [Vibrio parahaemolyticus strain DLM1799]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGCGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCTAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0XBW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.626

100

0.836
  pilP Vibrio cholerae strain A1552

58.14

100

0.585