Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IGI26_RS01985 Genome accession   NZ_CP075487
Coordinates   298830..299594 (-) Length   254 a.a.
NCBI ID   WP_024243155.1    Uniprot ID   -
Organism   Escherichia coli strain NT1F34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 293830..304594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI26_RS01975 nikR 297620..298021 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  IGI26_RS01980 nikE 298027..298833 (-) 807 WP_185229686.1 nickel import ATP-binding protein NikE -
  IGI26_RS01985 amiE 298830..299594 (-) 765 WP_024243155.1 nickel import ATP-binding protein NikD Regulator
  IGI26_RS01990 nikC 299594..300427 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  IGI26_RS01995 nikB 300424..301368 (-) 945 WP_000947062.1 nickel ABC transporter permease subunit NikB -
  IGI26_RS02000 nikA 301368..302942 (-) 1575 WP_000953348.1 nickel ABC transporter substrate-binding protein -
  IGI26_RS02005 acpT 303053..303640 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.42 Da        Isoelectric Point: 6.5997

>NTDB_id=498583 IGI26_RS01985 WP_024243155.1 298830..299594(-) (amiE) [Escherichia coli strain NT1F34]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=498583 IGI26_RS01985 WP_024243155.1 298830..299594(-) (amiE) [Escherichia coli strain NT1F34]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGGATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398