Detailed information NTG0049858

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: HK86_RS15705
• Genome accession: NC_021847
• Coordinates: 3336757..3339579 (+)
• Length: 940 a.a.
• NCBI ID: WP_041170720.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:Kuk str. FDA_R31
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3331757..3344579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK86_RS15685 (M634_16075)	csrD	3331786..3333795 (-)	2010	WP_020841338.1	RNase E specificity factor CsrD	-
HK86_RS15690 (M634_16080)	ssb	3334036..3334566 (-)	531	WP_005466625.1	single-stranded DNA-binding protein	Machinery gene
HK86_RS15695 (M634_16085)	qstR	3334845..3335489 (+)	645	WP_020841339.1	LuxR C-terminal-related transcriptional regulator	Regulator
HK86_RS15700 (M634_16090)	galU	3335747..3336619 (+)	873	WP_005466627.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-
HK86_RS15705 (M634_16095)	uvrA	3336757..3339579 (+)	2823	WP_041170720.1	excinuclease ABC subunit UvrA	Machinery gene
HK86_RS15710 (M634_16100)	-	3339647..3341425 (+)	1779	WP_020841341.1	PglL family O-oligosaccharyltransferase	-
HK86_RS15715 (M634_16105)	-	3341543..3342664 (-)	1122	WP_020841342.1	alanine--glyoxylate aminotransferase family protein	-

Sequence

Protein

• Length: 940 a.a.
• Molecular weight: 103868.15 Da
• Isoelectric Point: 6.5711

>NTDB_id=49858 HK86_RS15705 WP_041170720.1 3336757..3339579(+) (uvrA) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MDKIEVRGARTHNLKDINLTIPRDKLTVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPTHHAPLAAQTVSQMVDKVLELPEGSKMMLLAPIVKERKG
EHVKTLENLAAQGFIRARIDGETCDLSNPPTLELHKKHTIEVVVDRFKIRPDLQQRLAESFETALELSGGIAVIAPMDGD
GEEIIFSANFACPQCGYSMQELEPRLFSFNNPAGACGTCDGLGVQQYFDPSRVIQDDSLSLAQGAIRGWDQKNYYYFQML
TSLADHYGFDLHAPFNSLPKKTQDVILKGSGRTEIEFKYINDRGDIRVKRHPFEGILNTLERRYRDTESNSVREELAKYI
STKSCSSCGGTRLRLEARNVFIADTTLPEIVELSIADALTFFQTLKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLTHLRDLGNTVLVVEHDEDAIRCADHVIDIG
PGAGVHGGNVVAEGTMDEIIANPNSLTGQYLSGAKEIAVPKERTPRDPKKTVELLGATGNNLKNVDLSIPVGLFSCITGV
SGSGKSTLINDTFFKIAHTQLNGATTAHPSPYKSIKGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES
RSRGYKPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLEMTVEDARTFFD
PVPAIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLTVLHRLRDH
GNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGEIIAQGTPEDVSQIEGSHTARFLKPMLK

Nucleotide

• Length: 2823 bp

>NTDB_id=49858 HK86_RS15705 WP_041170720.1 3336757..3339579(+) (uvrA) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGGATAAAATAGAAGTTCGCGGTGCCCGAACCCATAACCTCAAAGACATCAATCTGACTATTCCTCGCGATAAACTGAC
AGTAATTACTGGGTTAAGCGGCTCCGGCAAGTCCTCTCTCGCATTCGATACCTTATATGCAGAAGGCCAACGACGTTATG
TCGAATCACTGTCTGCTTATGCTCGTCAGTTTTTGTCTCTTATGGAAAAACCAGATGTCGATCACATCGAAGGTTTATCA
CCGGCGATTTCTATTGAACAAAAATCGACATCTCATAACCCTCGCTCAACCGTCGGTACCATCACCGAAGTTTACGACTA
CTTACGTCTGCTTTACGCTCGTGTTGGTGAACCACGCTGTCCTACTCACCACGCCCCATTAGCCGCACAAACTGTCAGCC
AGATGGTGGATAAAGTATTGGAACTGCCGGAAGGCAGCAAAATGATGCTGCTTGCTCCAATAGTAAAAGAGCGCAAAGGC
GAGCATGTAAAAACACTAGAAAACCTTGCCGCCCAAGGTTTTATTCGAGCGCGTATTGACGGCGAAACTTGTGATCTTTC
AAATCCTCCAACACTTGAGCTACACAAAAAACACACCATTGAAGTCGTGGTCGACCGATTCAAAATTCGCCCAGATCTGC
AACAACGTTTAGCAGAGTCATTTGAGACGGCGCTAGAGCTTTCTGGTGGTATTGCGGTGATTGCTCCGATGGATGGCGAT
GGGGAAGAAATCATCTTTTCAGCGAACTTCGCTTGTCCGCAATGTGGCTACAGCATGCAAGAGCTGGAACCGAGATTGTT
CTCATTTAACAACCCAGCAGGCGCGTGTGGAACTTGTGATGGCTTGGGTGTACAACAGTATTTTGATCCAAGCCGAGTGA
TTCAAGATGACTCACTCAGTTTGGCACAAGGTGCTATTCGTGGTTGGGATCAAAAGAATTACTATTACTTCCAAATGCTG
ACTTCATTGGCGGATCATTATGGATTTGATTTGCATGCTCCGTTCAACTCTCTGCCAAAGAAAACGCAAGACGTTATTCT
CAAAGGCTCAGGTCGCACCGAGATCGAGTTTAAGTACATCAATGATCGCGGCGACATTCGTGTAAAGCGCCACCCATTTG
AAGGGATTTTAAATACGCTTGAACGTCGTTACCGCGATACCGAGTCCAACTCGGTTCGAGAAGAGTTAGCTAAATACATC
TCGACAAAATCATGCTCAAGCTGTGGCGGTACTCGTCTACGCCTTGAAGCACGTAATGTATTTATTGCCGATACTACCTT
ACCTGAGATCGTTGAGCTCAGTATTGCAGATGCCCTTACCTTCTTCCAAACACTCAAGCTAGAAGGTCAACGTGCACAAA
TCGCAGAAAAGGTCATGAAGGAGATCAATGATCGTCTACAGTTCCTTGTAAATGTGGGCTTGAACTACCTTAATTTATCC
CGGAGTGCAGAGACGCTATCCGGTGGCGAAGCACAACGCATTCGCTTAGCGAGCCAAATTGGTGCAGGTCTTGTTGGTGT
CATGTACGTATTAGATGAACCGTCGATTGGCCTCCACCAGCGTGATAACGAACGACTCCTAAAAACACTGACTCATTTGC
GCGATTTAGGTAATACCGTACTCGTGGTAGAACACGATGAAGATGCCATTCGCTGTGCCGATCACGTGATTGATATTGGC
CCAGGAGCGGGGGTACACGGCGGTAATGTGGTTGCCGAAGGAACCATGGACGAGATCATCGCCAACCCGAACTCTCTCAC
AGGTCAGTATCTAAGTGGCGCAAAAGAGATAGCAGTCCCTAAAGAGCGTACCCCTCGCGATCCAAAGAAAACCGTCGAGC
TACTAGGCGCAACAGGTAACAACCTGAAGAACGTCGACTTGTCTATTCCTGTCGGATTGTTTAGCTGTATTACTGGCGTG
TCTGGCTCCGGTAAATCAACGTTGATTAACGATACGTTCTTCAAAATTGCACACACCCAGCTCAATGGCGCTACTACTGC
ACACCCATCGCCTTATAAGTCGATTAAAGGTCTAGAACATTTCGATAAGGTTATCGACATCGATCAAAGCCCAATTGGCC
GAACACCACGCTCGAACCCTGCGACATACACGGGAATCTTTACCCCTATTCGCGAGCTGTTTGCTGGTACGCAGGAATCA
CGTTCACGTGGTTACAAACCTGGCCGCTTTAGTTTTAACGTTCGCGGTGGTCGTTGTGAAGCTTGTCAGGGGGATGGTGT
CATCAAAGTCGAGATGCACTTCTTACCAGACGTGTACGTGCCATGTGATGTGTGTAAAGGGAAGCGCTATAACCGCGAAA
CACTGGAAGTACGCTACAAAGGCAAAACCATCGATGAAGTACTGGAAATGACCGTCGAGGATGCTCGCACCTTCTTCGAT
CCTGTTCCTGCGATTGCCCGCAAGCTGCAAACTCTAATGGACGTTGGTCTGTCTTACATTCGCTTAGGTCAAGCTGCAAC
CACATTATCAGGCGGCGAAGCGCAGCGAGTGAAATTGGCAAGAGAGCTATCCAAGCGTGATACGGGTAAAACCTTGTACA
TTCTGGATGAGCCGACAACTGGTCTGCACTTCCATGATATTCAGCAGCTATTAACTGTACTTCATCGCCTGCGCGATCAC
GGGAATACCGTTGTGGTTATCGAGCATAACTTGGACGTCATCAAAACAGCAGACTGGATCATCGACTTAGGACCAGAAGG
CGGACAAGGCGGCGGAGAGATCATTGCCCAGGGAACACCAGAAGATGTGTCTCAGATCGAAGGTTCGCACACAGCTCGAT
TCCTTAAGCCTATGTTGAAATAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (130-237)

• ABC transporter (ABC_tran) (622-859)

• UvrA DNA-binding domain (UvrA_DNA-bind) (289-398)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	58.068	100	0.582
uvrA	Streptococcus pneumoniae TIGR4	58.068	100	0.582
uvrA	Streptococcus pneumoniae D39	58.068	100	0.582