Detailed information NTG0498572

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H9K48_RS14240
• Genome accession: NZ_CP064033
• Coordinates: 3042969..3044015 (+)
• Length: 348 a.a.
• NCBI ID: WP_257381111.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain DLM1805
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3037969..3049015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K48_RS14220 (H9K48_14175)	rplC	3038542..3039171 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
H9K48_RS14225 (H9K48_14180)	rpsJ	3039186..3039497 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
H9K48_RS14230 (H9K48_14185)	rpmE	3039955..3040176 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
H9K48_RS14235 (H9K48_14190)	priA	3040471..3042675 (+)	2205	WP_029839750.1	primosomal protein N'	-
H9K48_RS14240 (H9K48_14195)	cytR	3042969..3044015 (+)	1047	WP_257381111.1	DNA-binding transcriptional regulator CytR	Regulator
H9K48_RS14245 (H9K48_14200)	ftsN	3044191..3044736 (+)	546	WP_005481405.1	cell division protein FtsN	-
H9K48_RS14250 (H9K48_14205)	hslV	3044900..3045451 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
H9K48_RS14255 (H9K48_14210)	hslU	3045475..3046806 (+)	1332	WP_086585053.1	HslU--HslV peptidase ATPase subunit	-
H9K48_RS14260 (H9K48_14215)	-	3046991..3047908 (+)	918	WP_086585055.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H9K48_RS14265 (H9K48_14220)	rraA	3047985..3048497 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
H9K48_RS14270 (H9K48_14225)	zapB	3048602..3048844 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=498572 H9K48_RS14240 WP_257381111.1 3042969..3044015(+) (cytR) [Vibrio parahaemolyticus strain DLM1805]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGLSKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=498572 H9K48_RS14240 WP_257381111.1 3042969..3044015(+) (cytR) [Vibrio parahaemolyticus strain DLM1805]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCGCAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGCTCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	99.713	100	0.997
cytR	Vibrio cholerae C6706	90.419	95.977	0.868