Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H9K48_RS02950 Genome accession   NZ_CP064033
Coordinates   605788..606312 (+) Length   174 a.a.
NCBI ID   WP_025792841.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 600788..611312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS02940 (H9K48_02935) gshA 603523..605091 (+) 1569 WP_015297257.1 glutamate--cysteine ligase -
  H9K48_RS02945 (H9K48_02940) - 605116..605721 (+) 606 WP_023624249.1 hypothetical protein -
  H9K48_RS02950 (H9K48_02945) luxS 605788..606312 (+) 525 WP_025792841.1 S-ribosylhomocysteine lyase Regulator
  H9K48_RS02955 (H9K48_02950) - 606374..607654 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  H9K48_RS02960 (H9K48_02955) - 607780..608574 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  H9K48_RS02965 (H9K48_02960) ffh 608787..610169 (+) 1383 WP_015297255.1 signal recognition particle protein -
  H9K48_RS02970 (H9K48_02965) rpsP 610379..610627 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  H9K48_RS02975 (H9K48_02970) rimM 610656..611204 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19247.96 Da        Isoelectric Point: 4.6153

>NTDB_id=498553 H9K48_RS02950 WP_025792841.1 605788..606312(+) (luxS) [Vibrio parahaemolyticus strain DLM1805]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVDVD

Nucleotide


Download         Length: 525 bp        

>NTDB_id=498553 H9K48_RS02950 WP_025792841.1 605788..606312(+) (luxS) [Vibrio parahaemolyticus strain DLM1805]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

98.276

0.874