Detailed information NTG0498550

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9K48_RS02820
• Genome accession: NZ_CP064033
• Coordinates: 583203..584192 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain DLM1805
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 578203..589192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K48_RS02785 (H9K48_02780)	ftsB	578211..578492 (+)	282	WP_005455577.1	cell division protein FtsB	-
H9K48_RS02790 (H9K48_02785)	ispD	578494..579198 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9K48_RS02795 (H9K48_02790)	ispF	579216..579692 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9K48_RS02800 (H9K48_02795)	truD	579739..580782 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
H9K48_RS02805 (H9K48_02800)	surE	580782..581558 (+)	777	WP_025792825.1	5'/3'-nucleotidase SurE	-
H9K48_RS02810 (H9K48_02805)	-	581558..582184 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H9K48_RS02815 (H9K48_02810)	-	582199..583122 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
H9K48_RS02820 (H9K48_02815)	rpoS	583203..584192 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
H9K48_RS02825 (H9K48_02820)	mutS	584271..586832 (-)	2562	WP_025792829.1	DNA mismatch repair protein MutS	-
H9K48_RS02830 (H9K48_02825)	pncC	586917..587399 (+)	483	WP_025554256.1	nicotinamide-nucleotide amidase	-
H9K48_RS02835 (H9K48_02830)	recA	587600..588643 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=498550 H9K48_RS02820 WP_005478537.1 583203..584192(+) (rpoS) [Vibrio parahaemolyticus strain DLM1805]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=498550 H9K48_RS02820 WP_005478537.1 583203..584192(+) (rpoS) [Vibrio parahaemolyticus strain DLM1805]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTGCTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACTTGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGATGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGGTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851