Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ISN74_RS04730 Genome accession   NZ_CP064030
Coordinates   1141882..1143261 (+) Length   459 a.a.
NCBI ID   WP_188797872.1    Uniprot ID   -
Organism   Dyella caseinilytica strain DHOB09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136882..1148261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN74_RS04695 (ISN74_04690) rpsF 1137001..1137429 (+) 429 WP_188797860.1 30S ribosomal protein S6 -
  ISN74_RS04700 (ISN74_04695) rpsR 1137446..1137676 (+) 231 WP_074552179.1 30S ribosomal protein S18 -
  ISN74_RS04705 (ISN74_04700) rplI 1137826..1138275 (+) 450 WP_188797862.1 50S ribosomal protein L9 -
  ISN74_RS04710 (ISN74_04705) dnaB 1138481..1139884 (+) 1404 WP_188797864.1 replicative DNA helicase -
  ISN74_RS04715 (ISN74_04710) alr 1140028..1141116 (+) 1089 WP_188797867.1 alanine racemase -
  ISN74_RS04720 (ISN74_04715) - 1141171..1141446 (+) 276 WP_188797868.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ISN74_RS04725 (ISN74_04720) - 1141446..1141772 (+) 327 WP_188797870.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ISN74_RS04730 (ISN74_04725) radA 1141882..1143261 (+) 1380 WP_188797872.1 DNA repair protein RadA Machinery gene
  ISN74_RS04735 (ISN74_04730) - 1143411..1143800 (+) 390 WP_188797874.1 PAAR domain-containing protein -
  ISN74_RS04740 (ISN74_04735) - 1143921..1144508 (+) 588 WP_188797876.1 PAAR domain-containing protein -
  ISN74_RS04745 (ISN74_04740) - 1144505..1145194 (+) 690 WP_203546702.1 hypothetical protein -
  ISN74_RS04750 (ISN74_04745) - 1145191..1145703 (+) 513 WP_188797878.1 hypothetical protein -
  ISN74_RS04755 (ISN74_04750) - 1145700..1146215 (+) 516 WP_188797881.1 hypothetical protein -
  ISN74_RS04760 (ISN74_04755) ccsA 1146435..1147259 (-) 825 WP_275411499.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48675.99 Da        Isoelectric Point: 7.4271

>NTDB_id=498525 ISN74_RS04730 WP_188797872.1 1141882..1143261(+) (radA) [Dyella caseinilytica strain DHOB09]
MAKAKTAYVCADCGAEHTKWQGQCVECGAWNTLSEFVVQPVQKSIAAARQGGYAGAANTVPRVTPLTEVLVTAESRTLTG
IGELDRVLGGGLVDGSVVLIGGDPGIGKSTLLLQMLGKLGEKLPSIYVTGEESLAQVASRAQRLDLPLQPLQALAETGIE
RILDQVAASRPRVLVIDSIQTIWTDLLTAAPGSVSQVRESAAKLTRFAKETGTSVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGDSGSRFRVLRAFKNRFGAVNELGVFAMSEKGLREVPNPSAIFLSAHSGPTSGSAVMVTREGTRPLLVEVQALVDQ
SSLGNPRRVALGLEQNRLAMLLAVLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEKTIAFGEV
GLSGEIRPVPNGEERMKEAAHHGFQRAIVPKANAPKKGRVGDMEVIGVERLADAIDACR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=498525 ISN74_RS04730 WP_188797872.1 1141882..1143261(+) (radA) [Dyella caseinilytica strain DHOB09]
ATGGCCAAAGCAAAAACTGCCTACGTCTGCGCCGATTGCGGTGCCGAGCACACCAAATGGCAAGGCCAGTGTGTCGAGTG
CGGTGCATGGAATACGCTTTCCGAATTCGTGGTGCAACCGGTGCAGAAGTCGATCGCCGCTGCACGGCAGGGTGGTTATG
CGGGTGCTGCCAATACTGTGCCGCGAGTGACACCGCTTACCGAAGTCCTTGTCACAGCCGAGTCACGTACCTTGACCGGC
ATTGGTGAACTGGATCGCGTGCTTGGCGGTGGCCTGGTCGATGGTTCGGTGGTGCTGATCGGTGGCGATCCTGGCATCGG
CAAATCGACTTTGTTACTGCAGATGCTCGGCAAGTTGGGCGAGAAACTTCCCAGCATTTATGTCACGGGCGAGGAGTCAT
TGGCACAGGTCGCCTCGCGTGCGCAGCGGCTTGATTTGCCATTACAGCCGCTGCAGGCACTTGCCGAAACCGGCATCGAG
CGCATTCTCGATCAAGTCGCGGCTTCGCGCCCGCGTGTGCTGGTGATCGACTCCATCCAGACGATCTGGACTGACTTGCT
CACCGCGGCGCCAGGTTCGGTCAGCCAAGTGCGTGAATCCGCGGCCAAGCTCACGCGTTTCGCCAAAGAAACCGGCACCT
CGGTCTTTCTCGTTGGCCACGTCACCAAAGAAGGCGGCATCGCCGGTCCGCGCGTGCTGGAACACATGGTTGACGCCGTG
CTGTATTTCGAAGGCGACTCCGGCAGCCGTTTTCGCGTGCTGCGCGCATTCAAGAACCGCTTTGGTGCGGTGAATGAACT
GGGCGTGTTCGCCATGTCCGAAAAAGGATTGCGCGAAGTACCCAATCCTTCGGCGATTTTCCTATCTGCACATAGTGGTC
CGACATCCGGCAGCGCGGTCATGGTGACGCGCGAAGGCACGCGCCCGTTGCTGGTGGAAGTGCAGGCGCTGGTGGATCAA
TCCTCGCTGGGCAATCCGCGCCGCGTGGCGTTGGGGCTGGAGCAGAATCGCCTGGCGATGTTGCTGGCGGTATTGCATCG
GCATGGCGGCGTTGCCGCTTATGATCAGGACGTGTTCGTGAACGTCGTCGGCGGTATCCGCGTGCAGGAAACTGCAGCCG
ACTTGCCTGTCCTGCTGGCGGTGCTTTCCTCGCTGCGCGATCGTCCTTTGCCGGAGAAAACCATCGCTTTCGGTGAAGTG
GGTCTTTCCGGCGAAATTCGCCCGGTGCCCAATGGCGAGGAGCGTATGAAAGAGGCCGCCCATCACGGCTTTCAACGCGC
GATCGTACCCAAGGCCAACGCGCCAAAGAAAGGACGTGTCGGCGACATGGAAGTGATCGGTGTGGAGCGGCTTGCGGATG
CGATCGACGCTTGCCGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(79-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

99.346

0.484
  radA Streptococcus mitis NCTC 12261

44.615

99.129

0.442
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442