Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HK86_RS12925 Genome accession   NC_021847
Coordinates   2750534..2751133 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2745534..2756133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS12900 (M634_13260) - 2745640..2746299 (-) 660 WP_005397228.1 transcriptional regulator -
  HK86_RS12905 (M634_13265) - 2746328..2747605 (-) 1278 WP_005479508.1 serine dehydratase subunit alpha family protein -
  HK86_RS12910 (M634_13270) - 2747621..2748001 (-) 381 WP_005479566.1 RidA family protein -
  HK86_RS12915 (M634_13275) - 2748319..2749578 (+) 1260 WP_005494432.1 amino acid permease -
  HK86_RS12920 (M634_13280) aqpZ 2749785..2750483 (+) 699 WP_005460095.1 aquaporin Z -
  HK86_RS12925 (M634_13285) recR 2750534..2751133 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  HK86_RS12930 (M634_13290) - 2751163..2751492 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  HK86_RS12935 (M634_13295) dnaX 2751575..2753710 (-) 2136 WP_020841133.1 DNA polymerase III subunit gamma/tau -
  HK86_RS12940 (M634_13300) apt 2753719..2754264 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  HK86_RS12945 (M634_13305) - 2754430..2754834 (-) 405 WP_005494429.1 YbaN family protein -
  HK86_RS27285 (M634_13310) - 2754850..2754981 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=49837 HK86_RS12925 WP_005460088.1 2750534..2751133(-) (recR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=49837 HK86_RS12925 WP_005460088.1 2750534..2751133(-) (recR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTTTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment