Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS86_RS13570 Genome accession   NZ_CP063992
Coordinates   2810263..2810859 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain M164-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2805263..2815859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS86_RS13550 - 2805455..2807212 (-) 1758 WP_004147851.1 Lon protease family protein -
  HXS86_RS13555 matP 2807398..2807850 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HXS86_RS13560 ompA 2807982..2809052 (-) 1071 WP_002898408.1 porin OmpA -
  HXS86_RS13565 sulA 2809405..2809914 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  HXS86_RS13570 sxy/tfoX 2810263..2810859 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HXS86_RS13575 yccS 2810873..2813008 (-) 2136 WP_002898422.1 YccS family putative transporter -
  HXS86_RS13580 - 2813026..2813472 (-) 447 WP_002898425.1 YccF domain-containing protein -
  HXS86_RS13585 helD 2813597..2815651 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=498363 HXS86_RS13570 WP_004179217.1 2810263..2810859(+) (sxy/tfoX) [Klebsiella pneumoniae strain M164-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498363 HXS86_RS13570 WP_004179217.1 2810263..2810859(+) (sxy/tfoX) [Klebsiella pneumoniae strain M164-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51