Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IR210_RS15775 Genome accession   NZ_CP063983
Coordinates   3262097..3262726 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain 25DN     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257097..3267726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR210_RS15760 (IR210_15765) helD 3257339..3259393 (-) 2055 WP_001443200.1 DNA helicase IV -
  IR210_RS15765 (IR210_15770) yccF 3259516..3259962 (+) 447 WP_001261236.1 YccF domain-containing protein -
  IR210_RS15770 (IR210_15775) yccS 3259972..3262134 (+) 2163 WP_000875041.1 YccS family putative transporter -
  IR210_RS15775 (IR210_15780) sxy/tfoX 3262097..3262726 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IR210_RS15780 (IR210_15785) sulA 3262945..3263454 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  IR210_RS15785 (IR210_15790) ompA 3263810..3264862 (+) 1053 WP_001528868.1 porin OmpA -
  IR210_RS15790 (IR210_15795) matP 3264940..3265392 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  IR210_RS15795 (IR210_15800) ycbZ 3265578..3267338 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=498308 IR210_RS15775 WP_000839136.1 3262097..3262726(-) (sxy/tfoX) [Escherichia coli strain 25DN]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=498308 IR210_RS15775 WP_000839136.1 3262097..3262726(-) (sxy/tfoX) [Escherichia coli strain 25DN]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99