Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DHf2319_RS06270 Genome accession   NZ_CP063982
Coordinates   1372056..1373423 (+) Length   455 a.a.
NCBI ID   WP_243479938.1    Uniprot ID   -
Organism   Orrella daihaiensis strain f23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367056..1378423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DHf2319_RS06245 (DHf2319_06495) guaA 1367787..1369379 (+) 1593 WP_243479933.1 glutamine-hydrolyzing GMP synthase -
  DHf2319_RS06250 (DHf2319_06500) - 1369382..1369750 (+) 369 WP_243479934.1 hypothetical protein -
  DHf2319_RS06255 (DHf2319_06505) - 1369905..1370129 (+) 225 WP_243479935.1 hypothetical protein -
  DHf2319_RS06260 (DHf2319_06510) - 1370527..1370763 (+) 237 WP_243479936.1 CDGSH iron-sulfur domain-containing protein -
  DHf2319_RS06265 (DHf2319_06515) alr 1370831..1371946 (+) 1116 WP_243479937.1 alanine racemase -
  DHf2319_RS06270 (DHf2319_06520) radA 1372056..1373423 (+) 1368 WP_243479938.1 DNA repair protein RadA Machinery gene
  DHf2319_RS06275 (DHf2319_06525) - 1373449..1375932 (+) 2484 WP_243479939.1 ABC transporter permease -
  DHf2319_RS06280 (DHf2319_06530) - 1375925..1376629 (+) 705 WP_243479940.1 3-deoxy-D-manno-octulosonic acid kinase -
  DHf2319_RS06285 (DHf2319_06535) - 1376784..1377878 (+) 1095 WP_369810231.1 polyamine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48139.50 Da        Isoelectric Point: 7.9971

>NTDB_id=498289 DHf2319_RS06270 WP_243479938.1 1372056..1373423(+) (radA) [Orrella daihaiensis strain f23]
MSKSKTKFVCQSCGTESPKWLGQCPGCQSWNTFEETREETAAAAAHRYAAVAGTAQLQRLADVEARELPRLPTGIAEFDR
VLGGGLVNGGVVLIGGDPGIGKSTLLLQALAAMSRSARVLYVTGEESAEQVALRARRLNLSSPEVDLLAEIRLEVIEEAL
KREPAPAVAVIDSIQTIYTSALSSAPGSVSQVRECAAQLTRMAKQSGVPIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDKGLKGVSNPSALFLSQHAEQVAGSCVMATQEGSRPLLVEVQALVDAANMPN
PRRLALGLEGHRLAMLLAVLHRHGGVSTSDQDVFVNAVGGVKITEPAADLPVLLAILSSLRDKPLPVGLVSFGEVGLAGE
VRPAPRGQERLKEAAKLGFSVAIIPAANKPKQAIEGLRVIAVNRLSQAIDAVRQV

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=498289 DHf2319_RS06270 WP_243479938.1 1372056..1373423(+) (radA) [Orrella daihaiensis strain f23]
ATGTCCAAATCAAAAACCAAGTTTGTCTGCCAGTCCTGCGGCACGGAGAGTCCTAAGTGGCTTGGCCAGTGCCCGGGCTG
CCAGTCATGGAACACCTTTGAAGAAACCCGTGAGGAAACAGCAGCTGCTGCTGCCCATCGCTATGCTGCGGTCGCGGGTA
CGGCGCAACTGCAACGCTTGGCTGACGTCGAAGCCCGTGAATTGCCCAGACTGCCCACGGGCATTGCTGAGTTTGATCGC
GTGCTAGGTGGGGGCTTGGTCAATGGTGGGGTGGTGCTCATTGGTGGTGATCCCGGTATTGGAAAGTCAACGCTTCTGTT
GCAGGCGCTTGCCGCGATGTCAAGAAGTGCCCGCGTACTGTATGTCACCGGTGAGGAGTCAGCCGAACAAGTTGCCTTAC
GGGCAAGGCGGCTCAACCTCTCGAGTCCCGAGGTGGATTTGTTGGCAGAAATTCGTCTTGAAGTGATTGAAGAGGCGCTA
AAGCGTGAACCAGCACCCGCGGTCGCCGTCATTGATTCGATCCAGACCATCTACACCAGCGCACTGTCTTCAGCACCAGG
GTCTGTGTCACAGGTTAGAGAGTGTGCGGCGCAGCTAACCCGCATGGCCAAGCAGTCGGGTGTGCCGATCGTCATGATTG
GACACGTCACCAAAGACGGTGCTTTGGCAGGTCCCCGCGTACTTGAACACATTGTTGACACGGTGTTGTATTTCGAGGGT
GATACACACTCTTCCTTCAGATTGGTGCGCGCTTTTAAAAACCGATTTGGTGCGGTCAATGAGTTGGGTGTATTTGCCAT
GACCGACAAAGGTTTAAAAGGCGTTTCGAACCCATCAGCGTTGTTCTTGTCACAACACGCCGAGCAAGTCGCTGGTTCTT
GCGTCATGGCCACGCAAGAGGGTTCGCGCCCTTTGCTAGTTGAAGTGCAGGCACTCGTCGATGCTGCCAACATGCCCAAC
CCCCGACGATTGGCCTTGGGTCTTGAGGGGCATCGATTAGCGATGTTGTTGGCTGTGTTACACCGACATGGTGGCGTGAG
CACCTCCGATCAGGACGTGTTTGTCAATGCCGTGGGTGGCGTGAAGATCACAGAACCTGCTGCGGACTTGCCGGTGTTGT
TGGCGATTTTGTCGTCATTGCGCGATAAGCCTTTGCCAGTAGGTTTGGTCTCGTTCGGCGAAGTGGGCTTAGCCGGCGAG
GTCCGGCCTGCGCCGCGCGGGCAGGAGCGGCTAAAAGAAGCTGCCAAGCTGGGGTTCTCGGTGGCGATTATTCCGGCGGC
TAACAAGCCAAAGCAAGCCATTGAGGGTCTGAGAGTTATTGCGGTCAACCGTCTGTCGCAGGCGATCGATGCGGTCAGGC
AGGTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.416

100

0.519
  radA Streptococcus pneumoniae Rx1

45.852

100

0.462
  radA Streptococcus pneumoniae D39

45.852

100

0.462
  radA Streptococcus mitis SK321

45.852

100

0.462
  radA Streptococcus pneumoniae R6

45.852

100

0.462
  radA Streptococcus pneumoniae TIGR4

45.852

100

0.462
  radA Streptococcus mitis NCTC 12261

45.952

100

0.462