Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IGI29_RS06530 Genome accession   NZ_CP075474
Coordinates   1204141..1204878 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NT1N28     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199141..1209878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI29_RS06500 yfiL 1199299..1199664 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IGI29_RS06505 aroF 1199874..1200944 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IGI29_RS06510 tyrA 1200955..1202076 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IGI29_RS06515 pheA 1202119..1203279 (-) 1161 WP_193115264.1 bifunctional chorismate mutase/prephenate dehydratase -
  IGI29_RS06520 pheL 1203378..1203425 (-) 48 WP_010723158.1 phe operon leader peptide -
  IGI29_RS06525 raiA 1203529..1203870 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IGI29_RS06530 comL 1204141..1204878 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IGI29_RS06535 rluD 1205013..1205993 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IGI29_RS06540 yfiH 1205990..1206721 (+) 732 WP_185229788.1 purine nucleoside phosphorylase YfiH -
  IGI29_RS06545 clpC 1206851..1209424 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=498289 IGI29_RS06530 WP_000197686.1 1204141..1204878(-) (comL) [Escherichia coli strain NT1N28]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=498289 IGI29_RS06530 WP_000197686.1 1204141..1204878(-) (comL) [Escherichia coli strain NT1N28]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376