Detailed information NTG0498285

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IGI29_RS05960
• Genome accession: NZ_CP075474
• Coordinates: 1095885..1096877 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NT1N28
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1090885..1101877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IGI29_RS05930	ispD	1090946..1091656 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IGI29_RS05935	ispF	1091656..1092135 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IGI29_RS05940	truD	1092132..1093181 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IGI29_RS05945	surE	1093162..1093923 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IGI29_RS05950	pcm	1093917..1094543 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IGI29_RS05955	nlpD	1094728..1095822 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IGI29_RS05960	rpoS	1095885..1096877 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IGI29_RS05965	ygbN	1096971..1098335 (-)	1365	WP_193115102.1	GntP family transporter	-
IGI29_RS05970	ygbM	1098424..1099200 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IGI29_RS05975	ygbL	1099205..1099843 (-)	639	WP_053263552.1	aldolase	-
IGI29_RS05980	otnK	1099840..1101102 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=498285 IGI29_RS05960 WP_000081550.1 1095885..1096877(+) (rpoS) [Escherichia coli strain NT1N28]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=498285 IGI29_RS05960 WP_000081550.1 1095885..1096877(+) (rpoS) [Escherichia coli strain NT1N28]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715