Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IGI29_RS02780 Genome accession   NZ_CP075474
Coordinates   452718..453395 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain NT1N28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447718..458395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI29_RS02765 chiA 449085..451778 (+) 2694 WP_115189382.1 bifunctional chitinase/lysozyme -
  IGI29_RS02770 bfd 451947..452141 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  IGI29_RS02775 bfr 452213..452689 (+) 477 WP_000675504.1 bacterioferritin -
  IGI29_RS02780 pilD 452718..453395 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  IGI29_RS02785 gspM 453395..453856 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  IGI29_RS02790 gspL 453853..455016 (-) 1164 Protein_411 type II secretion system protein GspL -
  IGI29_RS02795 gspK 455031..456014 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  IGI29_RS02800 gspJ 456007..456594 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  IGI29_RS02805 gspI 456587..456964 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  IGI29_RS02810 gspH 456961..457470 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  IGI29_RS02815 gspG 457478..457915 (-) 438 WP_001202880.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=498273 IGI29_RS02780 WP_000178161.1 452718..453395(-) (pilD) [Escherichia coli strain NT1N28]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=498273 IGI29_RS02780 WP_000178161.1 452718..453395(-) (pilD) [Escherichia coli strain NT1N28]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378