Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IGI29_RS01585 Genome accession   NZ_CP075474
Coordinates   180774..181757 (+) Length   327 a.a.
NCBI ID   WP_001196486.1    Uniprot ID   A7ZT85
Organism   Escherichia coli strain NT1N28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 175774..186757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI29_RS01570 dppA 176917..178524 (+) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -
  IGI29_RS01575 dppB 178832..179851 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  IGI29_RS01580 dppC 179861..180763 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  IGI29_RS01585 amiE 180774..181757 (+) 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein Regulator
  IGI29_RS01590 dppF 181754..182758 (+) 1005 WP_193115227.1 dipeptide ABC transporter ATP-binding subunit DppF -
  IGI29_RS01595 yhjV 182788..184059 (-) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  IGI29_RS01600 ldrD 184535..184642 (+) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  IGI29_RS01605 bcsG 184729..186408 (-) 1680 WP_000191622.1 cellulose biosynthesis protein BcsG -
  IGI29_RS01610 bcsF 186405..186596 (-) 192 WP_000988308.1 cellulose biosynthesis protein BcsF -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35844.36 Da        Isoelectric Point: 6.5814

>NTDB_id=498266 IGI29_RS01585 WP_001196486.1 180774..181757(+) (amiE) [Escherichia coli strain NT1N28]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=498266 IGI29_RS01585 WP_001196486.1 180774..181757(+) (amiE) [Escherichia coli strain NT1N28]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404