Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IP614_RS18600 Genome accession   NZ_CP063975
Coordinates   3613229..3613507 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain N435-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3608229..3618507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP614_RS18580 - 3609909..3610718 (+) 810 WP_000664547.1 papain-like cysteine protease family protein -
  IP614_RS18585 - 3610744..3611346 (+) 603 WP_000517262.1 hypothetical protein -
  IP614_RS18590 - 3611588..3611839 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  IP614_RS18595 - 3612216..3613089 (+) 874 Protein_3593 helix-turn-helix domain-containing protein -
  IP614_RS18600 abrB 3613229..3613507 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IP614_RS18605 - 3614025..3615275 (+) 1251 WP_242784775.1 hypothetical protein -
  IP614_RS18610 - 3615343..3616101 (+) 759 WP_000347986.1 TSUP family transporter -
  IP614_RS18615 - 3616355..3617014 (+) 660 WP_000682538.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=498236 IP614_RS18600 WP_000842216.1 3613229..3613507(+) (abrB) [Bacillus cereus strain N435-1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=498236 IP614_RS18600 WP_000842216.1 3613229..3613507(+) (abrB) [Bacillus cereus strain N435-1]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489