Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IP614_RS16500 Genome accession   NZ_CP063975
Coordinates   3206657..3206944 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus cereus strain N435-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3201657..3211944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP614_RS16480 - 3202833..3203030 (+) 198 WP_065845447.1 DUF4083 domain-containing protein -
  IP614_RS16485 - 3203062..3203523 (+) 462 WP_000024999.1 NUDIX hydrolase -
  IP614_RS16490 nadE 3203573..3204391 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  IP614_RS16495 - 3204661..3206541 (+) 1881 WP_044584370.1 ABC transporter permease -
  IP614_RS16500 abrB 3206657..3206944 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IP614_RS16505 - 3207221..3208168 (+) 948 WP_000099756.1 serine protease -
  IP614_RS16510 - 3208216..3208554 (+) 339 Protein_3171 MFS transporter permease -
  IP614_RS31495 - 3208603..3208809 (+) 207 WP_001101740.1 hypothetical protein -
  IP614_RS16515 - 3208849..3209073 (-) 225 WP_000162602.1 hypothetical protein -
  IP614_RS16520 - 3209158..3209505 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  IP614_RS16525 - 3209702..3210243 (+) 542 Protein_3175 DinB family protein -
  IP614_RS16530 rsgA 3210411..3211463 (+) 1053 WP_001073075.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=498234 IP614_RS16500 WP_000648325.1 3206657..3206944(+) (abrB) [Bacillus cereus strain N435-1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=498234 IP614_RS16500 WP_000648325.1 3206657..3206944(+) (abrB) [Bacillus cereus strain N435-1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526