Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IP614_RS12795 Genome accession   NZ_CP063975
Coordinates   2473584..2473907 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain N435-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2468584..2478907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP614_RS12770 - 2468876..2470162 (+) 1287 WP_000247028.1 D-alanyl-D-alanine carboxypeptidase family protein -
  IP614_RS12775 - 2470354..2470923 (+) 570 WP_000767792.1 signal peptidase I -
  IP614_RS12780 - 2470984..2471571 (+) 588 WP_000172854.1 CalY family protein -
  IP614_RS12785 - 2471706..2472530 (+) 825 WP_242785512.1 DUF4047 domain-containing protein -
  IP614_RS12790 calY 2472918..2473511 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  IP614_RS12795 sinR 2473584..2473907 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  IP614_RS12800 - 2473987..2474121 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  IP614_RS12805 inhA1 2474464..2476854 (+) 2391 WP_001035951.1 M6 family metalloprotease immune inhibitor InhA1 -
  IP614_RS12810 - 2477026..2478393 (+) 1368 WP_000028383.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=498231 IP614_RS12795 WP_000578885.1 2473584..2473907(-) (sinR) [Bacillus cereus strain N435-1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=498231 IP614_RS12795 WP_000578885.1 2473584..2473907(-) (sinR) [Bacillus cereus strain N435-1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGCAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692