Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IGI24_RS09195 Genome accession   NZ_CP075472
Coordinates   1784334..1785761 (-) Length   475 a.a.
NCBI ID   WP_193125236.1    Uniprot ID   -
Organism   Escherichia coli strain NT1F25     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779334..1790761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI24_RS09165 yeeZ 1779389..1780213 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IGI24_RS09170 yeeY 1780259..1781188 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  IGI24_RS09175 yoeI 1781403..1781465 (+) 63 WP_010723108.1 membrane protein YoeI -
  IGI24_RS09180 plaP 1781455..1782813 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IGI24_RS09185 tsuA 1782992..1784050 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  IGI24_RS09190 tsuB 1784064..1784291 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IGI24_RS09195 sbcB 1784334..1785761 (-) 1428 WP_193125236.1 exodeoxyribonuclease I Machinery gene
  IGI24_RS09200 dacD 1785970..1787136 (+) 1167 WP_001741928.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IGI24_RS09205 sbmC 1787255..1787728 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  IGI24_RS09210 yeeA 1787926..1788984 (+) 1059 WP_001200895.1 FUSC family protein -
  IGI24_RS09215 tmaR 1789156..1789485 (+) 330 WP_000450409.1 DUF496 family protein -
  IGI24_RS23335 - 1789586..1789951 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=498218 IGI24_RS09195 WP_193125236.1 1784334..1785761(-) (sbcB) [Escherichia coli strain NT1F25]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPTLDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=498218 IGI24_RS09195 WP_193125236.1 1784334..1785761(-) (sbcB) [Escherichia coli strain NT1F25]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCATCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGACACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581