Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IP614_RS06420 Genome accession   NZ_CP063975
Coordinates   1242959..1243243 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain N435-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237959..1248243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP614_RS06385 tmk 1238151..1238777 (+) 627 WP_000677214.1 dTMP kinase -
  IP614_RS06390 holB 1238813..1239796 (+) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  IP614_RS06395 - 1239802..1240629 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  IP614_RS06400 yabA 1240644..1240994 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  IP614_RS06405 - 1241077..1241817 (+) 741 WP_001055367.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IP614_RS06410 - 1241804..1242094 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  IP614_RS06415 rsmI 1242063..1242938 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IP614_RS06420 abrB 1242959..1243243 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IP614_RS06425 metG 1243702..1245711 (+) 2010 WP_074596524.1 methionine--tRNA ligase -
  IP614_RS06430 - 1245878..1246645 (+) 768 WP_025966285.1 TatD family hydrolase -
  IP614_RS06435 rnmV 1246860..1247417 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=498214 IP614_RS06420 WP_000843036.1 1242959..1243243(-) (abrB) [Bacillus cereus strain N435-1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=498214 IP614_RS06420 WP_000843036.1 1242959..1243243(-) (abrB) [Bacillus cereus strain N435-1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851