Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   IGI24_RS05405 Genome accession   NZ_CP075472
Coordinates   978914..979906 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain NT1F25     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 973914..984906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI24_RS05375 ispD 973975..974685 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IGI24_RS05380 ispF 974685..975164 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IGI24_RS05385 truD 975161..976210 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  IGI24_RS05390 surE 976191..976952 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  IGI24_RS05395 pcm 976946..977572 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  IGI24_RS05400 nlpD 977757..978851 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  IGI24_RS05405 rpoS 978914..979906 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  IGI24_RS05410 ygbN 980000..981364 (-) 1365 WP_000104441.1 GntP family transporter -
  IGI24_RS05415 ygbM 981453..982229 (-) 777 WP_193125216.1 HPr family phosphocarrier protein -
  IGI24_RS05420 ygbL 982234..982872 (-) 639 WP_032298484.1 aldolase -
  IGI24_RS05425 otnK 982869..984131 (-) 1263 WP_000590403.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=498203 IGI24_RS05405 WP_000081550.1 978914..979906(+) (rpoS) [Escherichia coli strain NT1F25]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=498203 IGI24_RS05405 WP_000081550.1 978914..979906(+) (rpoS) [Escherichia coli strain NT1F25]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715