Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOP81_RS07020 Genome accession   NZ_CP063955
Coordinates   1531935..1532558 (+) Length   207 a.a.
NCBI ID   WP_046883543.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain S148-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1526935..1537558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOP81_RS07000 - 1527084..1528841 (-) 1758 WP_032711302.1 Lon protease family protein -
  IOP81_RS07005 matP 1529027..1529479 (+) 453 WP_015367432.1 macrodomain Ter protein MatP -
  IOP81_RS07010 ompA 1529571..1530623 (-) 1053 WP_080473199.1 porin OmpA -
  IOP81_RS07015 sulA 1530976..1531485 (-) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  IOP81_RS07020 sxy/tfoX 1531935..1532558 (+) 624 WP_046883543.1 TfoX/Sxy family DNA transformation protein Regulator
  IOP81_RS07025 yccS 1532546..1534681 (-) 2136 WP_020079239.1 YccS family putative transporter -
  IOP81_RS07030 - 1534699..1535145 (-) 447 WP_020079238.1 YccF domain-containing protein -
  IOP81_RS07035 helD 1535269..1537323 (+) 2055 WP_046883503.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23596.33 Da        Isoelectric Point: 10.0181

>NTDB_id=498145 IOP81_RS07020 WP_046883543.1 1531935..1532558(+) (sxy/tfoX) [Klebsiella aerogenes strain S148-1]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDAGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=498145 IOP81_RS07020 WP_046883543.1 1531935..1532558(+) (sxy/tfoX) [Klebsiella aerogenes strain S148-1]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATGCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493