Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IGI32_RS08820 Genome accession   NZ_CP075469
Coordinates   1847315..1848739 (-) Length   474 a.a.
NCBI ID   WP_085438546.1    Uniprot ID   -
Organism   Escherichia coli strain NT1W22     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842315..1853739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI32_RS08790 yeeZ 1842370..1843194 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IGI32_RS08795 yeeY 1843240..1844169 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IGI32_RS08800 yoeI 1844384..1844446 (+) 63 WP_010723108.1 membrane protein YoeI -
  IGI32_RS08805 plaP 1844436..1845794 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IGI32_RS08810 tsuA 1845973..1847031 (+) 1059 WP_064670362.1 thiosulfate utilization transporter TsuA/YeeE -
  IGI32_RS08815 tsuB 1847045..1847272 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IGI32_RS08820 sbcB 1847315..1848739 (-) 1425 WP_085438546.1 exodeoxyribonuclease I Machinery gene
  IGI32_RS08825 - 1848921..1850099 (+) 1179 WP_151044111.1 tyrosine-type recombinase/integrase -
  IGI32_RS08830 - 1850080..1850271 (-) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  IGI32_RS08835 - 1850302..1850469 (-) 168 WP_032320906.1 hypothetical protein -
  IGI32_RS08840 - 1850542..1850826 (-) 285 WP_122991675.1 ASCH domain-containing protein -
  IGI32_RS08845 - 1850819..1851037 (-) 219 WP_151044108.1 hypothetical protein -
  IGI32_RS08850 - 1851034..1851219 (-) 186 WP_001276453.1 hypothetical protein -
  IGI32_RS08855 - 1851222..1851992 (-) 771 WP_151044106.1 DUF551 domain-containing protein -
  IGI32_RS08860 - 1851997..1852368 (-) 372 WP_223411737.1 hypothetical protein -
  IGI32_RS24085 - 1852779..1852904 (-) 126 Protein_1751 hypothetical protein -
  IGI32_RS08870 - 1852901..1853065 (-) 165 WP_001214456.1 DUF2737 family protein -
  IGI32_RS08875 - 1853076..1853369 (-) 294 WP_001111298.1 phage anti-RecBCD protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54398.72 Da        Isoelectric Point: 5.4700

>NTDB_id=498137 IGI32_RS08820 WP_085438546.1 1847315..1848739(-) (sbcB) [Escherichia coli strain NT1W22]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=498137 IGI32_RS08820 WP_085438546.1 1847315..1848739(-) (sbcB) [Escherichia coli strain NT1W22]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584