Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IOD50_RS05910 Genome accession   NZ_CP063954
Coordinates   1277976..1278572 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain S129-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272976..1283572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD50_RS05890 - 1273205..1274962 (-) 1758 WP_194394723.1 Lon protease family protein -
  IOD50_RS05895 matP 1275148..1275600 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  IOD50_RS05900 ompA 1275711..1276763 (-) 1053 WP_008805892.1 porin OmpA -
  IOD50_RS05905 sulA 1277116..1277625 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  IOD50_RS05910 sxy/tfoX 1277976..1278572 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  IOD50_RS05915 yccS 1278586..1280721 (-) 2136 WP_008805895.1 YccS family putative transporter -
  IOD50_RS05920 - 1280739..1281185 (-) 447 WP_012542294.1 YccF domain-containing protein -
  IOD50_RS05925 helD 1281310..1283364 (+) 2055 WP_194394722.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=498122 IOD50_RS05910 WP_012542296.1 1277976..1278572(+) (sxy/tfoX) [Klebsiella variicola strain S129-1]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=498122 IOD50_RS05910 WP_012542296.1 1277976..1278572(+) (sxy/tfoX) [Klebsiella variicola strain S129-1]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505